Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_009585-T1 | |
OS493_009586-T1 | SERINE/THREONINE-PROTEIN KINASE ATM |
OS493_009587-T1 | |
OS493_009588-T1 | |
OS493_009589-T1 | MULTIPLE COAGULATION FACTOR DEFICIENCY PROTEIN 2 NEURAL STEM CELL DERIVED NEURONAL SURVIVAL PROTEIN |
OS493_009590-T1 | |
OS493_009591-T1 | SPLICING FACTOR SF3A-RELATED |
OS493_009592-T1 | LISH DOMAIN-CONTAINING PROTEIN ARMC9 |
OS493_009593-T1 | MICROTUBULE-ASSOCIATED PROTEIN |
OS493_009594-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_009595-T1 | |
OS493_009596-T1 | LETHAL 2 GIANT LARVAE PROTEIN |
OS493_009597-T1 | LETHAL 2 GIANT LARVAE PROTEIN |
OS493_009598-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
OS493_009599-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
OS493_009600-T1 | - |
OS493_009601-T1 | - |
OS493_009602-T1 | LYSYL ENDOPEPTIDASE |
OS493_009603-T1 | CYTOCHROME P450 FAMILY 7 |
OS493_009604-T1 | CYTOCHROME P450 FAMILY 7 |
OS493_009605-T1 | FIBROBLAST GROWTH FACTOR |
OS493_009606-T1 | FIBROBLAST GROWTH FACTOR |
OS493_009607-T1 | FIBROBLAST GROWTH FACTOR |
OS493_009608-T1 | |
OS493_009609-T1 | BRG-1 ASSOCIATED FACTOR 250 BAF250 |
OS493_009610-T1 | TRANSAMIDASE |
OS493_009611-T1 | TRANSAMIDASE |
OS493_009612-T1 | |
OS493_009613-T1 | OSTEOPETROSIS ASSOCIATED TRANSMEMBRANE PROTEIN 1 |
OS493_009614-T1 | CLEAVAGE STIMULATION FACTOR SUBUNIT 2 |
OS493_009615-T1 | NADPH OXIDASE |
OS493_009616-T1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
OS493_009618-T1 | RE52028P |
OS493_009619-T1 | HSD9 |
OS493_009620-T1 | GATA-TYPE ZINC FINGER PROTEIN 1 |
OS493_009621-T1 | UNCHARACTERIZED |
OS493_009622-T1 | NUCLEAR HORMONE RECEPTOR |
OS493_009623-T1 | G PROTEIN-COUPLED RECEPTOR |
OS493_009624-T1 | NUCLEAR HORMONE RECEPTOR |
OS493_009625-T1 | UNCHARACTERIZED |
OS493_009626-T1 | ALKALINE PHOSPHATASE |
OS493_009627-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_009628-T1 | |
OS493_009629-T1 | TAXILIN |
OS493_009630-T1 | WD REPEAT DOMAIN 9 |
OS493_009631-T1 | DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER |
OS493_009632-T1 | DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER |
OS493_009633-T1 | CONNECTOR ENCHANCER OF KINASE SUPPRESSOR OF RAS |
OS493_009634-T1 | |
OS493_009635-T1 | EXPRESSED PROTEIN |