Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_009793-T1 | |
OS493_009794-T1 | MYOSIN |
OS493_009795-T1 | MYOSIN |
OS493_009796-T1 | MYOSIN |
OS493_009797-T1 | FATTY-ACID AMIDE HYDROLASE |
OS493_009798-T1 | |
OS493_009799-T1 | P53 REGULATED PA26 NUCLEAR PROTEIN SESTRIN |
OS493_009800-T1 | POLYCOMB GROUP PROTEIN |
OS493_009801-T1 | POLYCOMB GROUP PROTEIN |
OS493_009802-T1 | |
OS493_009803-T1 | FORKHEAD BOX PROTEIN O |
OS493_009804-T1 | DNA POLYMERASE ZETA CATALYTIC SUBUNIT |
OS493_009805-T1 | |
OS493_009806-T1 | |
OS493_009807-T1 | DNA POLYMERASE ZETA CATALYTIC SUBUNIT |
OS493_009808-T1 | DNA POLYMERASE ZETA CATALYTIC SUBUNIT |
OS493_009809-T1 | OXIDORED-NITRO DOMAIN-CONTAINING PROTEIN |
OS493_009810-T1 | BLR2807 PROTEIN |
OS493_009811-T1 | PR DOMAIN ZINC FINGER PROTEIN |
OS493_009812-T1 | |
OS493_009813-T1 | |
OS493_009814-T1 | 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED |
OS493_009815-T1 | U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14 |
OS493_009816-T1 | RNA RECOGNITION MOTIF-CONTAINING |
OS493_009817-T1 | |
OS493_009818-T1 | |
OS493_009819-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 181 |
OS493_009820-T1 | |
OS493_009821-T1 | CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B |
OS493_009822-T1 | RING FINGER PROTEIN 17 |
OS493_009823-T1 | RING FINGER PROTEIN 17 |
OS493_009824-T1 | |
OS493_009825-T1 | BRIX DOMAIN CONTAINING PROTEIN |
OS493_009826-T1 | SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 3 |
OS493_009827-T1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 |
OS493_009828-T1 | KINETOCHORE PROTEIN NDC80 |
OS493_009829-T1 | APOLIPOPROTEIN L |
OS493_009830-T1 | APOLIPOPROTEIN L |
OS493_009831-T1 | KINETOCHORE PROTEIN NDC80 |
OS493_009832-T1 | RAS-RELATED PROTEIN RAB |
OS493_009833-T1 | COLLAGEN ALPHA |
OS493_009834-T1 | PERIAXIN-LIKE |
OS493_009835-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_009836-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_009838-T1 | |
OS493_009839-T1 | SI:CH211-266K2.1 |
OS493_009840-T1 | MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER |
OS493_009841-T1 | MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER |
OS493_009842-T1 | |
OS493_009843-T1 |