Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_010263-T1 | EGF-LIKE-DOMAIN, MULTIPLE 7, 8 |
OS493_010264-T1 | CYTOCHROME P450 FAMILY 3 |
OS493_010265-T1 | EGF-LIKE-DOMAIN, MULTIPLE 7, 8 |
OS493_010266-T1 | |
OS493_010267-T1 | |
OS493_010268-T1 | - |
OS493_010269-T1 | |
OS493_010270-T1 | |
OS493_010271-T1 | PHOSPHOLIPID SCRAMBLASE-RELATED |
OS493_010272-T1 | CYTOCHROME P450 FAMILY 3 |
OS493_010273-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_010274-T1 | CULLIN |
OS493_010275-T1 | BTK-BINDING PROTEIN-RELATED |
OS493_010276-T1 | CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 |
OS493_010277-T1 | UNCHARACTERIZED |
OS493_010278-T1 | UNCHARACTERIZED |
OS493_010279-T1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 8 |
OS493_010280-T1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 8 |
OS493_010281-T1 | ASPARTYL PROTEASE-RELATED |
OS493_010282-T1 | 4-NITROPHENYLPHOSPHATASE-RELATED |
OS493_010283-T1 | |
OS493_010284-T1 | AUTOPHAGY PROTEIN 16-LIKE |
OS493_010285-T1 | E3 UBIQUITIN-PROTEIN LIGASE PPP1R11-RELATED |
OS493_010286-T1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 12 |
OS493_010287-T1 | CLATHRIN HEAVY CHAIN RELATED |
OS493_010288-T1 | BOMBESIN RECEPTOR-ACTIVATED PROTEIN C6ORF89 |
OS493_010289-T1 | |
OS493_010290-T1 | |
OS493_010291-T1 | SODIUM/POTASSIUM/CALCIUM EXCHANGER |
OS493_010292-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_010293-T1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_010294-T1 | UBIQUITIN-FOLD MODIFIER-CONJUGATING ENZYME 1 |
OS493_010295-T1 | |
OS493_010296-T1 | B-CELL TRANSLOCATION GENE |
OS493_010297-T1 | LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN |
OS493_010298-T1 | LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN |
OS493_010299-T1 | |
OS493_010300-T1 | LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN |
OS493_010301-T1 | |
OS493_010302-T1 | |
OS493_010303-T1 | CENTROBIN |
OS493_010304-T1 | CENTROBIN |
OS493_010305-T1 | PROTEIN MIS12 HOMOLOG |
OS493_010306-T1 | |
OS493_010307-T1 | ORIGIN RECOGNITION COMPLEX SUBUNIT 3 |
OS493_010308-T1 | |
OS493_010309-T1 | ORIGIN RECOGNITION COMPLEX SUBUNIT 3 |
OS493_010310-T1 | |
OS493_010311-T1 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
OS493_010312-T1 |