About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

<< First 185 186 187 188 189 190 191 192 193 194 Forward> Last>>        1875 pages in total

Gene IDDescription
OS493_004057-T1SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
OS493_004058-T1PROTEIN PHOSPHATASE 2C
OS493_004059-T1RABPHILIN, ISOFORM A
OS493_004060-T1THIOESTERASE
OS493_004061-T1PROTEIN LIAT1
OS493_004062-T1-
OS493_004063-T1LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1
OS493_004064-T1PROTEIN LIN1
OS493_004065-T1TRANSMEMBRANE PROTEIN 180
OS493_004066-T1OPSIN
OS493_004067-T1SOLUTE CARRIER FAMILY 13 MEMBER
OS493_004068-T1SOLUTE CARRIER FAMILY 13 MEMBER
OS493_004069-T1SOLUTE CARRIER FAMILY 13 MEMBER
OS493_004070-T1-
OS493_004071-T1-
OS493_004072-T1SOLUTE CARRIER FAMILY 13 MEMBER
OS493_004073-T1SOLUTE CARRIER FAMILY 13 MEMBER
OS493_004074-T1DNA REPAIR PROTEIN RAD51 HOMOLOG 4
OS493_004076-T1DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED
OS493_004077-T1DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED
TOP