Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_010051-T1 | 2,5-DIKETO-D-GLUCONIC ACID REDUCTASE |
OS493_010052-T1 | 2,5-DIKETO-D-GLUCONIC ACID REDUCTASE |
OS493_010053-T1 | 2,5-DIKETO-D-GLUCONIC ACID REDUCTASE |
OS493_010054-T1 | |
OS493_010055-T1 | GRANULIN |
OS493_010056-T1 | |
OS493_010057-T1 | LIPOXYGENASE |
OS493_010058-T1 | LIPOXYGENASE |
OS493_010059-T1 | |
OS493_010060-T1 | LIPOXYGENASE |
OS493_010061-T1 | COLLAGEN ALPHA |
OS493_010062-T1 | |
OS493_010063-T1 | LIPOXYGENASE |
OS493_010064-T1 | LIPOXYGENASE |
OS493_010065-T1 | UBIQUITINATION FACTOR E4 |
OS493_010066-T1 | |
OS493_010067-T1 | TRANSMEMBRANE PROTEIN 208 |
OS493_010068-T1 | |
OS493_010069-T1 | MRNA GUANINE-7- METHYLTRANSFERASE |
OS493_010070-T1 | ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-BINDING PROTEIN |
OS493_010071-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
OS493_010072-T1 | MOLTING PROTEIN MLT-4 |
OS493_010073-T1 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
OS493_010074-T1 | |
OS493_010075-T1 | |
OS493_010076-T1 | |
OS493_010077-T1 | ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE |
OS493_010078-T1 | G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER |
OS493_010079-T1 | PROTEIN CBG13728 |
OS493_010080-T1 | |
OS493_010081-T1 | PROTEIN CBG13728 |
OS493_010082-T1 | TNF RECEPTOR ASSOCIATED FACTOR |
OS493_010083-T1 | SMALL INTEGRAL MEMBRANE PROTEIN 15 |
OS493_010084-T1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN |
OS493_010085-T1 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II |
OS493_010086-T1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
OS493_010087-T1 | SERINE/THREONINE-PROTEIN KINASE RIO1 |
OS493_010088-T1 | REGULATORY PROTEIN ZESTE |
OS493_010089-T1 | REGULATORY PROTEIN ZESTE |
OS493_010090-T1 | |
OS493_010091-T1 | |
OS493_010092-T1 | |
OS493_010093-T1 | LEUCINE-RICH REPEAT, ISOFORM F-RELATED |
OS493_010094-T1 | 4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 3-RELATED |
OS493_010095-T1 | BETA-CAROTENE DIOXYGENASE |
OS493_010096-T1 | BETA-CAROTENE DIOXYGENASE |
OS493_010097-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_010098-T1 | NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 3 |
OS493_010099-T1 | RAS-RELATED PROTEIN RAB |
OS493_010100-T1 | - |