About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_010472-T1
OS493_010473-T1CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A
OS493_010474-T1CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A
OS493_010475-T1
OS493_010476-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_010477-T1GLR0591 PROTEIN
OS493_010478-T1GLR0591 PROTEIN
OS493_010479-T1
OS493_010480-T1INTIMAL THICKNESS RECEPTOR-RELATED
OS493_010481-T1LD33804P
OS493_010482-T1
OS493_010483-T1LD33804P
OS493_010484-T1
OS493_010485-T1RNA-BINDING MOTIF PROTEIN, X-LINKED 2
OS493_010486-T1WD REPEAT-CONTAINING PROTEIN 53
OS493_010487-T1TRANSCRIPTION FACTOR DP
OS493_010488-T1PEPTIDASE S8
OS493_010489-T1RHOMBOID-RELATED PROTEIN
OS493_010490-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_010491-T1
OS493_010492-T1DIACYLGLYCEROL O-ACYLTRANSFERASE
OS493_010493-T1
OS493_010494-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED
OS493_010495-T1
OS493_010496-T1
OS493_010497-T1
OS493_010498-T1
OS493_010499-T1
OS493_010500-T1
OS493_010501-T1
OS493_010502-T1
OS493_010503-T1ARYLACETAMIDE DEACETYLASE
OS493_010504-T1
OS493_010505-T1AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C
OS493_010506-T1
OS493_010507-T1UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN
OS493_010508-T1RAS-RELATED GTP BINDING RAG/GTR YEAST
OS493_010509-T1DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT
OS493_010510-T1PROTEIN IWS1 HOMOLOG
OS493_010511-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_010512-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_010513-T1UNCHARACTERIZED
OS493_010514-T1G PROTEIN-COUPLED RECEPTOR
OS493_010515-T1STRAWBERRY NOTCH-RELATED
OS493_010516-T1STRAWBERRY NOTCH-RELATED
OS493_010517-T1CALCIUM HOMEOSTASIS MODULATOR PROTEIN
OS493_010519-T1DIHYDRODIPICOLINATE SYNTHASE
OS493_010520-T1UBIQUITIN-LIKE-CONJUGATING ENZYME ATG3
OS493_010521-T1
OS493_010522-T1ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT
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