Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_010472-T1 | |
OS493_010473-T1 | CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A |
OS493_010474-T1 | CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A |
OS493_010475-T1 | |
OS493_010476-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_010477-T1 | GLR0591 PROTEIN |
OS493_010478-T1 | GLR0591 PROTEIN |
OS493_010479-T1 | |
OS493_010480-T1 | INTIMAL THICKNESS RECEPTOR-RELATED |
OS493_010481-T1 | LD33804P |
OS493_010482-T1 | |
OS493_010483-T1 | LD33804P |
OS493_010484-T1 | |
OS493_010485-T1 | RNA-BINDING MOTIF PROTEIN, X-LINKED 2 |
OS493_010486-T1 | WD REPEAT-CONTAINING PROTEIN 53 |
OS493_010487-T1 | TRANSCRIPTION FACTOR DP |
OS493_010488-T1 | PEPTIDASE S8 |
OS493_010489-T1 | RHOMBOID-RELATED PROTEIN |
OS493_010490-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_010491-T1 | |
OS493_010492-T1 | DIACYLGLYCEROL O-ACYLTRANSFERASE |
OS493_010493-T1 | |
OS493_010494-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED |
OS493_010495-T1 | |
OS493_010496-T1 | |
OS493_010497-T1 | |
OS493_010498-T1 | |
OS493_010499-T1 | |
OS493_010500-T1 | |
OS493_010501-T1 | |
OS493_010502-T1 | |
OS493_010503-T1 | ARYLACETAMIDE DEACETYLASE |
OS493_010504-T1 | |
OS493_010505-T1 | AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C |
OS493_010506-T1 | |
OS493_010507-T1 | UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN |
OS493_010508-T1 | RAS-RELATED GTP BINDING RAG/GTR YEAST |
OS493_010509-T1 | DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT |
OS493_010510-T1 | PROTEIN IWS1 HOMOLOG |
OS493_010511-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_010512-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_010513-T1 | UNCHARACTERIZED |
OS493_010514-T1 | G PROTEIN-COUPLED RECEPTOR |
OS493_010515-T1 | STRAWBERRY NOTCH-RELATED |
OS493_010516-T1 | STRAWBERRY NOTCH-RELATED |
OS493_010517-T1 | CALCIUM HOMEOSTASIS MODULATOR PROTEIN |
OS493_010519-T1 | DIHYDRODIPICOLINATE SYNTHASE |
OS493_010520-T1 | UBIQUITIN-LIKE-CONJUGATING ENZYME ATG3 |
OS493_010521-T1 | |
OS493_010522-T1 | ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT |