About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_004139-T1BICD FAMILY-LIKE CARGO ADAPTER
OS493_004140-T1BICD FAMILY-LIKE CARGO ADAPTER
OS493_004141-T1-
OS493_004142-T1THIOREDOXIN-LIKE PROTEN 4A, 4B
OS493_004143-T1NUCLEAR CAP-BINDING PROTEIN SUBUNIT 3
OS493_004144-T1-
OS493_004146-T1CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING
OS493_004147-T1RNA BINDING PROTEIN
OS493_004148-T1-
OS493_004149-T1BREAST CANCER METASTASIS-SUPPRESSOR 1
OS493_004150-T1VACUOLAR SORTING PROTEIN VPS29
OS493_004151-T1DER1-LIKE PROTEIN, DERLIN
OS493_004152-T1MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22
OS493_004153-T1-
OS493_004154-T1TRANSMEMBRANE PROTEIN 246
OS493_004155-T1UNCHARACTERIZED
OS493_004157-T1DCTP PYROPHOSPHATASE 1
OS493_004158-T1DCTP PYROPHOSPHATASE 1
OS493_004160-T1STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1
OS493_004161-T1NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL
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