About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_010952-T1GLIAL FIBRILLARY ACIDIC PROTEIN
OS493_010953-T1LAMIN DM0-RELATED
OS493_010954-T1IMIDAZOLONEPROPIONASE
OS493_010955-T1METAXIN RELATED
OS493_010956-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_010957-T1LEUCOKININ RECEPTOR-RELATED
OS493_010958-T1LEUCOKININ RECEPTOR-RELATED
OS493_010959-T1LEUCOKININ RECEPTOR-RELATED
OS493_010960-T1
OS493_010961-T1HOMEOBOX PROTEIN ARISTALESS
OS493_010962-T1
OS493_010963-T1
OS493_010964-T1PROLINE-RICH PROTEIN PRCC
OS493_010965-T1PROLINE-RICH PROTEIN PRCC
OS493_010966-T1THROMBOSPONDIN
OS493_010967-T1ZINC FINGER PROTEIN
OS493_010968-T1THROMBOSPONDIN
OS493_010969-T1SERINE/THREONINE-PROTEIN KINASE
OS493_010970-T1UBIQUITIN THIOESTERASE
OS493_010971-T1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
OS493_010972-T1CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED
OS493_010973-T1DNA2/NAM7 HELICASE FAMILY
OS493_010974-T1DNA2/NAM7 HELICASE FAMILY
OS493_010975-T1
OS493_010976-T1LIPOXYGENASE
OS493_010977-T1PHENYLALANYL-TRNA SYNTHETASE
OS493_010978-T1
OS493_010979-T1
OS493_010980-T1
OS493_010981-T1
OS493_010982-T1
OS493_010984-T1
OS493_010985-T1KINESIN-RELATED PROTEIN 6
OS493_010986-T1KINESIN-RELATED PROTEIN 6
OS493_010987-T1
OS493_010988-T1SAM DOMAIN-CONTAINING PROTEIN-RELATED
OS493_010989-T1TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
OS493_010990-T1
OS493_010991-T1UNCHARACTERIZED
OS493_010992-T1UNCHARACTERIZED
OS493_010993-T1
OS493_010994-T1
OS493_010995-T1
OS493_010996-T1
OS493_010997-T1TANDEM PH DOMAIN CONTAINING PROTEIN
OS493_010998-T1
OS493_010999-T1
OS493_011000-T1TRANSCRIPTIONAL REPRESSOR P66-RELATED
OS493_011001-T1UNCHARACTERIZED
OS493_011002-T1UNCHARACTERIZED
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