About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_011003-T1
OS493_011004-T1
OS493_011005-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_011006-T1PENTRAXIN
OS493_011008-T1
OS493_011009-T1
OS493_011010-T1CYCLIN
OS493_011011-T1THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1
OS493_011012-T1DIPHTHAMIDE BIOSYNTHESIS PROTEIN
OS493_011014-T1
OS493_011015-T1FORKHEAD BOX PROTEIN N1
OS493_011016-T1TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN
OS493_011017-T1
OS493_011019-T1RIKEN CDNA 9930021J03 GENE
OS493_011020-T1TYROSINE-PROTEIN KINASE BAZ1B
OS493_011022-T1TYROSINE-PROTEIN KINASE BAZ1B
OS493_011023-T1PHD FINGER PROTEIN
OS493_011024-T1TRANSCRIPTION INTERMEDIARY FACTOR
OS493_011025-T1VINCULIN
OS493_011026-T1VINCULIN
OS493_011027-T1VINCULIN
OS493_011028-T1SET1/ASH2 HISTONE METHYLTRANSFERASE COMPLEX SUBUNIT ASH2
OS493_011029-T1
OS493_011030-T1REMODELING AND SPACING FACTOR 1
OS493_011031-T1WD40 REPEAT PROTEIN 4
OS493_011034-T1
OS493_011035-T1INHIBITOR OF APOPTOSIS
OS493_011036-T1DI-N-ACETYLCHITOBIASE
OS493_011037-T1DI-N-ACETYLCHITOBIASE
OS493_011038-T1
OS493_011039-T1
OS493_011040-T1RPE-SPONDIN
OS493_011041-T1
OS493_011042-T1CADHERIN-23
OS493_011043-T1DESMOGLEIN FAMILY MEMBER
OS493_011044-T1
OS493_011045-T1
OS493_011046-T1
OS493_011047-T1
OS493_011049-T1
OS493_011050-T1
OS493_011051-T1
OS493_011052-T1MYOTROPHIN
OS493_011053-T1DENN DOMAIN-CONTAINING PROTEIN 4
OS493_011054-T1
OS493_011055-T1TGF-BETA FAMILY
OS493_011056-T1TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1
OS493_011057-T1
OS493_011058-T1
OS493_011059-T1CADHERIN-87A
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