About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_011118-T1
OS493_011119-T1
OS493_011120-T1
OS493_011121-T1ZINC FINGER AND SCAN DOMAIN-CONTAINING
OS493_011122-T1
OS493_011123-T1TRANSCRIPTIONAL REPRESSOR PROTEIN YY
OS493_011124-T1GPI-ANCHORED PROTEIN P137
OS493_011125-T1LD15586P
OS493_011126-T1XLR/SCP3/FAM9
OS493_011127-T1LUNG ADENOMA SUSCEPTIBILITY 1-RELATED
OS493_011128-T1LUNG ADENOMA SUSCEPTIBILITY 1-RELATED
OS493_011129-T1LUNG ADENOMA SUSCEPTIBILITY 1-RELATED
OS493_011130-T1
OS493_011131-T1
OS493_011132-T1SPECKLE-TYPE POZ PROTEIN
OS493_011134-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_011135-T1CDP-DIACYLGLYCEROL--SERINE O-PHOSPHATIDYLTRANSFERASE
OS493_011136-T1
OS493_011137-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_011138-T1CDP-DIACYLGLYCEROL--SERINE O-PHOSPHATIDYLTRANSFERASE
OS493_011140-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_011141-T1CDP-DIACYLGLYCEROL--SERINE O-PHOSPHATIDYLTRANSFERASE
OS493_011142-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_011143-T1CDP-DIACYLGLYCEROL--SERINE O-PHOSPHATIDYLTRANSFERASE
OS493_011144-T1
OS493_011145-T1
OS493_011146-T1CDP-DIACYLGLYCEROL--SERINE O-PHOSPHATIDYLTRANSFERASE
OS493_011147-T1
OS493_011148-T1DYNEIN INTERMEDIATE CHAIN
OS493_011149-T1
OS493_011150-T1
OS493_011151-T1TETRASPANIN
OS493_011152-T1
OS493_011153-T1TETRASPANIN
OS493_011154-T1TESTIS-SPECIFIC Y-ENCODED PROTEIN
OS493_011155-T1HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED
OS493_011156-T1SIMILAR TO HYPOTHETICAL PROTEIN FLJ40298
OS493_011157-T1DRAB11-RELATED
OS493_011158-T1
OS493_011160-T1
OS493_011161-T1
OS493_011162-T1
OS493_011163-T1SUPPRESSOR OF VARIEGATION 4-20-RELATED
OS493_011164-T1
OS493_011165-T1ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
OS493_011166-T1
OS493_011167-T1STEROL ISOMERASE
OS493_011168-T1TRANSCRIPTION INITIATION FACTOR IIB-RELATED
OS493_011169-T1
OS493_011171-T1
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