Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_011277-T1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
OS493_011278-T1 | |
OS493_011279-T1 | AMMONIUM TRANSPORTER |
OS493_011280-T1 | |
OS493_011281-T1 | AMMONIUM TRANSPORTER |
OS493_011282-T1 | AMMONIUM TRANSPORTER |
OS493_011283-T1 | UNCHARACTERIZED |
OS493_011284-T1 | UNCHARACTERIZED |
OS493_011285-T1 | - |
OS493_011286-T1 | |
OS493_011287-T1 | |
OS493_011288-T1 | DED DOMAIN-CONTAINING PROTEIN |
OS493_011289-T1 | |
OS493_011290-T1 | |
OS493_011291-T1 | PATHOGENESIS-RELATED FAMILY PROTEIN |
OS493_011292-T1 | PATHOGENESIS-RELATED FAMILY PROTEIN |
OS493_011293-T1 | GLUTATHIONE PEROXIDASE |
OS493_011294-T1 | |
OS493_011295-T1 | CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 IPLA2 -RELATED |
OS493_011296-T1 | |
OS493_011297-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 172 |
OS493_011298-T1 | CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 IPLA2 -RELATED |
OS493_011299-T1 | DNA POLYMERASE CATALYTIC SUBUNIT |
OS493_011300-T1 | |
OS493_011301-T1 | BETA-ELIMINATING LYASE-LIKE PROTEIN-RELATED |
OS493_011302-T1 | PROTEIN EMI5 HOMOLOG, MITOCHONDRIAL |
OS493_011303-T1 | |
OS493_011304-T1 | |
OS493_011305-T1 | |
OS493_011306-T1 | |
OS493_011307-T1 | CATION TRANSPORT PROTEIN CHAC-RELATED |
OS493_011308-T1 | AKT1 SUBSTRATE 1 PROTEIN |
OS493_011309-T1 | EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN |
OS493_011310-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_011311-T1 | RETICULOCALBIN |
OS493_011312-T1 | METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE |
OS493_011313-T1 | |
OS493_011314-T1 | ARYLSULFATASE |
OS493_011315-T1 | ARYLSULFATASE |
OS493_011316-T1 | ARYLSULFATASE |
OS493_011317-T1 | |
OS493_011318-T1 | |
OS493_011319-T1 | SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING |
OS493_011320-T1 | WAT1-RELATED PROTEIN |
OS493_011321-T1 | |
OS493_011322-T1 | EXPRESSED PROTEIN |
OS493_011323-T1 | EXPRESSED PROTEIN |
OS493_011324-T1 | PROTEIN DISPATCHED-RELATED |
OS493_011325-T1 | PROTEIN DISPATCHED-RELATED |
OS493_011326-T1 | PROTEIN DISPATCHED-RELATED |