About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_011277-T1DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
OS493_011278-T1
OS493_011279-T1AMMONIUM TRANSPORTER
OS493_011280-T1
OS493_011281-T1AMMONIUM TRANSPORTER
OS493_011282-T1AMMONIUM TRANSPORTER
OS493_011283-T1UNCHARACTERIZED
OS493_011284-T1UNCHARACTERIZED
OS493_011285-T1-
OS493_011286-T1
OS493_011287-T1
OS493_011288-T1DED DOMAIN-CONTAINING PROTEIN
OS493_011289-T1
OS493_011290-T1
OS493_011291-T1PATHOGENESIS-RELATED FAMILY PROTEIN
OS493_011292-T1PATHOGENESIS-RELATED FAMILY PROTEIN
OS493_011293-T1GLUTATHIONE PEROXIDASE
OS493_011294-T1
OS493_011295-T1CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 IPLA2 -RELATED
OS493_011296-T1
OS493_011297-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 172
OS493_011298-T1CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 IPLA2 -RELATED
OS493_011299-T1DNA POLYMERASE CATALYTIC SUBUNIT
OS493_011300-T1
OS493_011301-T1BETA-ELIMINATING LYASE-LIKE PROTEIN-RELATED
OS493_011302-T1PROTEIN EMI5 HOMOLOG, MITOCHONDRIAL
OS493_011303-T1
OS493_011304-T1
OS493_011305-T1
OS493_011306-T1
OS493_011307-T1CATION TRANSPORT PROTEIN CHAC-RELATED
OS493_011308-T1AKT1 SUBSTRATE 1 PROTEIN
OS493_011309-T1EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN
OS493_011310-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_011311-T1RETICULOCALBIN
OS493_011312-T1METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE
OS493_011313-T1
OS493_011314-T1ARYLSULFATASE
OS493_011315-T1ARYLSULFATASE
OS493_011316-T1ARYLSULFATASE
OS493_011317-T1
OS493_011318-T1
OS493_011319-T1SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING
OS493_011320-T1WAT1-RELATED PROTEIN
OS493_011321-T1
OS493_011322-T1EXPRESSED PROTEIN
OS493_011323-T1EXPRESSED PROTEIN
OS493_011324-T1PROTEIN DISPATCHED-RELATED
OS493_011325-T1PROTEIN DISPATCHED-RELATED
OS493_011326-T1PROTEIN DISPATCHED-RELATED
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