About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_011225-T1
OS493_011226-T1
OS493_011227-T1
OS493_011228-T1
OS493_011229-T1
OS493_011230-T1
OS493_011231-T1
OS493_011232-T1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
OS493_011234-T1ARGININE OR CREATINE KINASE
OS493_011235-T1ARGININE OR CREATINE KINASE
OS493_011236-T1
OS493_011237-T1
OS493_011238-T1GLYCOSYLTRANSFERASE
OS493_011240-T1HISTONE-LYSINE N-METHYLTRANSFERASE EGGLESS
OS493_011241-T1
OS493_011242-T1HISTONE-LYSINE N-METHYLTRANSFERASE EGGLESS
OS493_011243-T1DUAL SPECIFICITY PROTEIN KINASE
OS493_011244-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_011245-T1NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
OS493_011246-T1
OS493_011247-T1
OS493_011248-T1UNCHARACTERIZED
OS493_011249-T1
OS493_011250-T1
OS493_011251-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
OS493_011252-T1ANKYRIN REPEAT PROTEIN
OS493_011253-T1
OS493_011254-T1
OS493_011255-T1
OS493_011256-T1
OS493_011257-T1
OS493_011258-T1
OS493_011259-T1
OS493_011260-T1
OS493_011261-T1
OS493_011262-T1
OS493_011263-T1
OS493_011264-T1
OS493_011265-T1
OS493_011266-T1SPLICING FACTOR, ARGININE/SERINE-RICH 19
OS493_011267-T1SPLICING FACTOR, ARGININE/SERINE-RICH 19
OS493_011268-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_011269-T1
OS493_011270-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_011271-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_011272-T1
OS493_011273-T1COMM DOMAIN-CONTAINING PROTEIN 9
OS493_011274-T1ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE
OS493_011275-T1
OS493_011276-T1RUVB-RELATED REPTIN AND PONTIN
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