About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_005013-T1-
OS493_005014-T1NUCLEAR RECEPTOR COACTIVATOR 5-RELATED
OS493_005015-T1-
OS493_005016-T1ENDO-1,4-BETA-GLUCANASE
OS493_005018-T1ENDO-1,4-BETA-GLUCANASE
OS493_005019-T1MATRIX METALLOPROTEINASE
OS493_005020-T1MATRIX METALLOPROTEINASE
OS493_005021-T1MATRIX METALLOPROTEINASE
OS493_005022-T1MATRIX METALLOPROTEINASE
OS493_005023-T1NEGATIVE ELONGATION FACTOR D
OS493_005024-T1MSF1/PX19 RELATED
OS493_005025-T1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10
OS493_005026-T1HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN
OS493_005027-T1SUGAR KINASE
OS493_005028-T1NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
OS493_005029-T1NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
OS493_005030-T1UBIQUITIN-ACTIVATING ENZYME E1
OS493_005031-T1-
OS493_005032-T1TRANSMEMBRANE PROTEIN WITH METALLOPHOSPHOESTERASE DOMAIN-RELATED
OS493_005033-T1ALANYL-TRNA SYNTHETASE
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