Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_012675-T1 | XANTHINE DEHYDROGENASE |
OS493_012676-T1 | SULFOQUINOVOSYL TRANSFERASE SQD2 |
OS493_012677-T1 | TYROSINE-PROTEIN KINASE HOPSCOTCH |
OS493_012678-T1 | TYROSINE-PROTEIN KINASE |
OS493_012679-T1 | |
OS493_012680-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_012681-T1 | TESTIS DEVELOPMENT PROTEIN PRTD |
OS493_012682-T1 | SALVADOR FAMILY WW DOMAIN-CONTAINING PROTEIN 1 |
OS493_012683-T1 | RADIAL SPOKEHEAD-RELATED |
OS493_012684-T1 | ATP-DEPENDENT RNA HELICASE DBP3 |
OS493_012685-T1 | RAGULATOR COMPLEX PROTEIN LAMTOR4 |
OS493_012686-T1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
OS493_012688-T1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 |
OS493_012689-T1 | |
OS493_012690-T1 | E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED |
OS493_012691-T1 | E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED |
OS493_012692-T1 | BONUS, ISOFORM C-RELATED |
OS493_012694-T1 | E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED |
OS493_012695-T1 | GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE |
OS493_012696-T1 | |
OS493_012697-T1 | UBIQUITIN-PROTEIN LIGASE E3C |
OS493_012698-T1 | L-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL |
OS493_012699-T1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
OS493_012700-T1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9-RELATED |
OS493_012701-T1 | VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED |
OS493_012702-T1 | EG:114D9.1 PROTEIN-RELATED |
OS493_012703-T1 | ARGINASE |
OS493_012704-T1 | EXOSOME COMPLEX COMPONENT |
OS493_012705-T1 | EXOSOME COMPLEX COMPONENT |
OS493_012706-T1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL |
OS493_012707-T1 | STRICTOSIDINE SYNTHASE-RELATED |
OS493_012708-T1 | |
OS493_012709-T1 | YIP1 INTERACTING FACTOR HOMOLOG YIF1 PROTEIN |
OS493_012710-T1 | SYNAPTIC ADHESION-LIKE MOLECULE SALM |
OS493_012711-T1 | |
OS493_012712-T1 | FIBRILLIN-RELATED |
OS493_012713-T1 | ACTIN |
OS493_012714-T1 | WD REPEAT PROTEIN |
OS493_012715-T1 | VESICLE PROTEIN SORTING-ASSOCIATED |
OS493_012716-T1 | |
OS493_012717-T1 | |
OS493_012718-T1 | RAB3-GAP REGULATORY DOMAIN |
OS493_012719-T1 | |
OS493_012720-T1 | RAB3-GAP REGULATORY DOMAIN |
OS493_012721-T1 | RAB3-GAP REGULATORY DOMAIN |
OS493_012722-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_012723-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_012724-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_012725-T1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_012726-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |