Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_013089-T1 | AXIN |
OS493_013090-T1 | FROUNT PROTEIN-RELATED |
OS493_013091-T1 | FROUNT PROTEIN-RELATED |
OS493_013092-T1 | SNF2/RAD54 FAMILY MEMBER |
OS493_013093-T1 | |
OS493_013094-T1 | |
OS493_013096-T1 | METHYLTRANSF_11 DOMAIN-CONTAINING PROTEIN |
OS493_013098-T1 | |
OS493_013099-T1 | |
OS493_013100-T1 | DEATH DOMAIN-CONTAINING PROTEIN CRADD |
OS493_013101-T1 | |
OS493_013102-T1 | |
OS493_013103-T1 | |
OS493_013104-T1 | |
OS493_013105-T1 | |
OS493_013106-T1 | ER LUMEN PROTEIN RETAINING RECEPTOR |
OS493_013107-T1 | SULFATE TRANSPORTER |
OS493_013108-T1 | SEC14 RELATED PROTEIN |
OS493_013109-T1 | DIPHTHINE METHYLTRANSFERASE |
OS493_013110-T1 | DIPHTHINE METHYLTRANSFERASE |
OS493_013111-T1 | UNCHARACTERIZED |
OS493_013112-T1 | RIBOSOMAL S SUBUNIT |
OS493_013113-T1 | |
OS493_013114-T1 | INACTIVE RHOMBOID PROTEIN |
OS493_013115-T1 | HISTONE DEACETYLASE HDAC1-RELATED |
OS493_013116-T1 | ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD |
OS493_013117-T1 | UNKEMPT FAMILY MEMBER |
OS493_013118-T1 | COILIN P80 |
OS493_013119-T1 | FORMIMINOTRANSFERASE-CYCLODEAMINASE |
OS493_013120-T1 | |
OS493_013121-T1 | LEUCINE-RICH REPEAT-CONTAINING |
OS493_013122-T1 | |
OS493_013123-T1 | |
OS493_013124-T1 | |
OS493_013125-T1 | GLYCOSYL HYDROLASE |
OS493_013126-T1 | GLYCOSYL HYDROLASE |
OS493_013127-T1 | GLYCOSYL HYDROLASE |
OS493_013128-T1 | GLYCOSYL HYDROLASE |
OS493_013129-T1 | SIMILAR TO PREFERENTIALLY EXPRESSED ANTIGEN IN MELANOMA-LIKE 3 |
OS493_013130-T1 | |
OS493_013131-T1 | |
OS493_013132-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
OS493_013133-T1 | |
OS493_013134-T1 | |
OS493_013135-T1 | SGT1 PROTEIN HSGT1 SUPPRESSOR OF GCR2 |
OS493_013136-T1 | SGT1 PROTEIN HSGT1 SUPPRESSOR OF GCR2 |
OS493_013137-T1 | FOLATE RECEPTOR |
OS493_013138-T1 | FOLATE RECEPTOR |
OS493_013139-T1 | |
OS493_013140-T1 |