About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_013089-T1AXIN
OS493_013090-T1FROUNT PROTEIN-RELATED
OS493_013091-T1FROUNT PROTEIN-RELATED
OS493_013092-T1SNF2/RAD54 FAMILY MEMBER
OS493_013093-T1
OS493_013094-T1
OS493_013096-T1METHYLTRANSF_11 DOMAIN-CONTAINING PROTEIN
OS493_013098-T1
OS493_013099-T1
OS493_013100-T1DEATH DOMAIN-CONTAINING PROTEIN CRADD
OS493_013101-T1
OS493_013102-T1
OS493_013103-T1
OS493_013104-T1
OS493_013105-T1
OS493_013106-T1ER LUMEN PROTEIN RETAINING RECEPTOR
OS493_013107-T1SULFATE TRANSPORTER
OS493_013108-T1SEC14 RELATED PROTEIN
OS493_013109-T1DIPHTHINE METHYLTRANSFERASE
OS493_013110-T1DIPHTHINE METHYLTRANSFERASE
OS493_013111-T1UNCHARACTERIZED
OS493_013112-T1RIBOSOMAL S SUBUNIT
OS493_013113-T1
OS493_013114-T1INACTIVE RHOMBOID PROTEIN
OS493_013115-T1HISTONE DEACETYLASE HDAC1-RELATED
OS493_013116-T1ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD
OS493_013117-T1UNKEMPT FAMILY MEMBER
OS493_013118-T1COILIN P80
OS493_013119-T1FORMIMINOTRANSFERASE-CYCLODEAMINASE
OS493_013120-T1
OS493_013121-T1LEUCINE-RICH REPEAT-CONTAINING
OS493_013122-T1
OS493_013123-T1
OS493_013124-T1
OS493_013125-T1GLYCOSYL HYDROLASE
OS493_013126-T1GLYCOSYL HYDROLASE
OS493_013127-T1GLYCOSYL HYDROLASE
OS493_013128-T1GLYCOSYL HYDROLASE
OS493_013129-T1SIMILAR TO PREFERENTIALLY EXPRESSED ANTIGEN IN MELANOMA-LIKE 3
OS493_013130-T1
OS493_013131-T1
OS493_013132-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
OS493_013133-T1
OS493_013134-T1
OS493_013135-T1SGT1 PROTEIN HSGT1 SUPPRESSOR OF GCR2
OS493_013136-T1SGT1 PROTEIN HSGT1 SUPPRESSOR OF GCR2
OS493_013137-T1FOLATE RECEPTOR
OS493_013138-T1FOLATE RECEPTOR
OS493_013139-T1
OS493_013140-T1
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