About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_013142-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
OS493_013143-T1V-TYPE ATPASE ASSEMBLY FACTOR PKR1
OS493_013144-T1GTPASE ERA
OS493_013145-T1ARRESTIN DOMAIN CONTAINING PROTEIN
OS493_013146-T1PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
OS493_013147-T1AD039 HT014 THIOREDOXIN FAMILY TRP26
OS493_013148-T1
OS493_013149-T1
OS493_013150-T1
OS493_013151-T1
OS493_013152-T1
OS493_013153-T1GLYCOGENIN SUBFAMILY MEMBER
OS493_013154-T1
OS493_013155-T1GLUTATHIONYL-HYDROQUINONE REDUCTASE
OS493_013156-T1GLYCOGENIN SUBFAMILY MEMBER
OS493_013157-T1
OS493_013158-T1
OS493_013159-T1
OS493_013160-T1CHROMOSOME TRANSMISSION FIDELITY FACTOR 18
OS493_013161-T1
OS493_013162-T1
OS493_013163-T13'-5' EXONUCLEASE ERI1-RELATED
OS493_013164-T1
OS493_013166-T1UNCHARACTERIZED
OS493_013167-T1TUBULIN EPSILON AND DELTA COMPLEX PROTEIN 2
OS493_013168-T1
OS493_013169-T1
OS493_013170-T1LD33804P
OS493_013171-T1
OS493_013172-T1
OS493_013174-T1
OS493_013175-T1
OS493_013176-T1
OS493_013177-T1ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD
OS493_013178-T1ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD
OS493_013179-T1VACUOLAR IMPORT AND DEGRADATION PROTEIN 24
OS493_013180-T1ELONGATION FACTOR TU-RELATED
OS493_013181-T1JOSEPHIN 1, 2
OS493_013182-T1CENTROMERE PROTEIN E
OS493_013183-T1PROTEIN FAM181B
OS493_013184-T1RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
OS493_013185-T1ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1
OS493_013186-T1
OS493_013187-T1ASTEROID PROTEIN
OS493_013188-T1ASTEROID PROTEIN
OS493_013189-T1ASTEROID PROTEIN
OS493_013190-T1CENTROMERE PROTEIN E
OS493_013191-T1EXPORTIN-6
OS493_013192-T1EXPORTIN-6
OS493_013193-T1
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