Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_012984-T1 | |
OS493_012985-T1 | ISTHMIN-2 |
OS493_012986-T1 | |
OS493_012987-T1 | FUKUTIN RELATED PROTEIN |
OS493_012988-T1 | |
OS493_012989-T1 | CYTOCHROME C OXIDASE ASSEMBLY FACTOR 6 HOMOLOG |
OS493_012990-T1 | |
OS493_012991-T1 | |
OS493_012992-T1 | |
OS493_012993-T1 | OTU DOMAIN CONTAINING PROTEIN |
OS493_012994-T1 | OVOCHYMASE-RELATED |
OS493_012995-T1 | |
OS493_012996-T1 | MYOSIN HEAVY CHAIN - RELATED |
OS493_012997-T1 | VASOHIBIN-1-LIKE ISOFORM X2 |
OS493_012998-T1 | |
OS493_012999-T1 | GLUTAMINE-RICH PROTEIN 2 |
OS493_013000-T1 | |
OS493_013001-T1 | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED |
OS493_013002-T1 | DIMETHYLARGININE DIMETHYLAMINOHYDROLASE |
OS493_013003-T1 | |
OS493_013004-T1 | DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT |
OS493_013005-T1 | DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT |
OS493_013006-T1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
OS493_013007-T1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
OS493_013008-T1 | |
OS493_013009-T1 | DYNEIN REGULATORY COMPLEX SUBUNIT 7 |
OS493_013010-T1 | DYNEIN REGULATORY COMPLEX SUBUNIT 7 |
OS493_013011-T1 | WD REPEAT DOMAIN-CONTAINING FAMILY |
OS493_013012-T1 | FERMITIN 2-RELATED |
OS493_013013-T1 | |
OS493_013014-T1 | C5ORF35 |
OS493_013015-T1 | |
OS493_013016-T1 | ZINC FINGER PROTEIN |
OS493_013017-T1 | |
OS493_013018-T1 | KATNB1-LIKE PROTEIN 1 |
OS493_013019-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 162 |
OS493_013020-T1 | DNA HELICASE RECQ FAMILY MEMBER |
OS493_013021-T1 | |
OS493_013023-T1 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 51 |
OS493_013024-T1 | PHOSPHATIDYLGLYCEROPHOSPHATASE AND PROTEIN-TYROSINE PHOSPHATASE 1 |
OS493_013025-T1 | |
OS493_013026-T1 | UNCHARACTERIZED |
OS493_013027-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_013028-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_013029-T1 | CALCIUM HOMEOSTASIS MODULATOR PROTEIN |
OS493_013030-T1 | AGAP007537-PB |
OS493_013032-T1 | |
OS493_013033-T1 | |
OS493_013034-T1 | RENIN RECEPTOR |
OS493_013035-T1 |