About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_012984-T1
OS493_012985-T1ISTHMIN-2
OS493_012986-T1
OS493_012987-T1FUKUTIN RELATED PROTEIN
OS493_012988-T1
OS493_012989-T1CYTOCHROME C OXIDASE ASSEMBLY FACTOR 6 HOMOLOG
OS493_012990-T1
OS493_012991-T1
OS493_012992-T1
OS493_012993-T1OTU DOMAIN CONTAINING PROTEIN
OS493_012994-T1OVOCHYMASE-RELATED
OS493_012995-T1
OS493_012996-T1MYOSIN HEAVY CHAIN - RELATED
OS493_012997-T1VASOHIBIN-1-LIKE ISOFORM X2
OS493_012998-T1
OS493_012999-T1GLUTAMINE-RICH PROTEIN 2
OS493_013000-T1
OS493_013001-T1HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED
OS493_013002-T1DIMETHYLARGININE DIMETHYLAMINOHYDROLASE
OS493_013003-T1
OS493_013004-T1DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT
OS493_013005-T1DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT
OS493_013006-T1SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
OS493_013007-T1SCAVENGER RECEPTOR DOMAIN-CONTAINING
OS493_013008-T1
OS493_013009-T1DYNEIN REGULATORY COMPLEX SUBUNIT 7
OS493_013010-T1DYNEIN REGULATORY COMPLEX SUBUNIT 7
OS493_013011-T1WD REPEAT DOMAIN-CONTAINING FAMILY
OS493_013012-T1FERMITIN 2-RELATED
OS493_013013-T1
OS493_013014-T1C5ORF35
OS493_013015-T1
OS493_013016-T1ZINC FINGER PROTEIN
OS493_013017-T1
OS493_013018-T1KATNB1-LIKE PROTEIN 1
OS493_013019-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 162
OS493_013020-T1DNA HELICASE RECQ FAMILY MEMBER
OS493_013021-T1
OS493_013023-T1LEUCINE-RICH REPEAT-CONTAINING PROTEIN 51
OS493_013024-T1PHOSPHATIDYLGLYCEROPHOSPHATASE AND PROTEIN-TYROSINE PHOSPHATASE 1
OS493_013025-T1
OS493_013026-T1UNCHARACTERIZED
OS493_013027-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_013028-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_013029-T1CALCIUM HOMEOSTASIS MODULATOR PROTEIN
OS493_013030-T1AGAP007537-PB
OS493_013032-T1
OS493_013033-T1
OS493_013034-T1RENIN RECEPTOR
OS493_013035-T1
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