About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_013036-T1DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE
OS493_013037-T1
OS493_013038-T1DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE
OS493_013039-T1DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE
OS493_013040-T1PROFILIN
OS493_013041-T1
OS493_013042-T1DOPAMINE BETA HYDROXYLASE RELATED
OS493_013043-T1
OS493_013044-T1DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE
OS493_013045-T1DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE
OS493_013046-T1DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE
OS493_013047-T1
OS493_013048-T1
OS493_013049-T1INHIBITOR OF GROWTH PROTEIN
OS493_013050-T1
OS493_013051-T1SMALL SEVEN TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN
OS493_013052-T1ATP SYNTHASE COUPLING FACTOR 6, MITOCHONDRIAL
OS493_013053-T1PORPHOBILINOGEN DEAMINASE
OS493_013054-T1
OS493_013055-T1
OS493_013057-T1
OS493_013058-T1PORPHOBILINOGEN DEAMINASE
OS493_013059-T1CALSEQUESTRIN
OS493_013060-T1CDC42 GTPASE-ACTIVATING PROTEIN
OS493_013061-T1
OS493_013062-T1
OS493_013063-T1CALCIUM HOMEOSTASIS MODULATOR PROTEIN
OS493_013064-T1CALCIUM HOMEOSTASIS MODULATOR PROTEIN
OS493_013065-T1
OS493_013066-T1
OS493_013067-T1
OS493_013068-T1INTEGRAL TRANSMEMBRANE PROTEIN 2
OS493_013071-T1
OS493_013072-T1
OS493_013073-T1PROTEIN TORNADO 1
OS493_013074-T1
OS493_013075-T1FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
OS493_013076-T1
OS493_013077-T1
OS493_013078-T1
OS493_013079-T1
OS493_013080-T1FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
OS493_013081-T1
OS493_013082-T1DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5
OS493_013083-T1
OS493_013084-T1HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE
OS493_013085-T1HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE
OS493_013086-T1TETHER CONTAINING UBX DOMAIN FOR GLUT4
OS493_013087-T1AXIN
OS493_013088-T1AXIN
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