Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_013036-T1 | DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE |
OS493_013037-T1 | |
OS493_013038-T1 | DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE |
OS493_013039-T1 | DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE |
OS493_013040-T1 | PROFILIN |
OS493_013041-T1 | |
OS493_013042-T1 | DOPAMINE BETA HYDROXYLASE RELATED |
OS493_013043-T1 | |
OS493_013044-T1 | DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE |
OS493_013045-T1 | DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE |
OS493_013046-T1 | DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE |
OS493_013047-T1 | |
OS493_013048-T1 | |
OS493_013049-T1 | INHIBITOR OF GROWTH PROTEIN |
OS493_013050-T1 | |
OS493_013051-T1 | SMALL SEVEN TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN |
OS493_013052-T1 | ATP SYNTHASE COUPLING FACTOR 6, MITOCHONDRIAL |
OS493_013053-T1 | PORPHOBILINOGEN DEAMINASE |
OS493_013054-T1 | |
OS493_013055-T1 | |
OS493_013057-T1 | |
OS493_013058-T1 | PORPHOBILINOGEN DEAMINASE |
OS493_013059-T1 | CALSEQUESTRIN |
OS493_013060-T1 | CDC42 GTPASE-ACTIVATING PROTEIN |
OS493_013061-T1 | |
OS493_013062-T1 | |
OS493_013063-T1 | CALCIUM HOMEOSTASIS MODULATOR PROTEIN |
OS493_013064-T1 | CALCIUM HOMEOSTASIS MODULATOR PROTEIN |
OS493_013065-T1 | |
OS493_013066-T1 | |
OS493_013067-T1 | |
OS493_013068-T1 | INTEGRAL TRANSMEMBRANE PROTEIN 2 |
OS493_013071-T1 | |
OS493_013072-T1 | |
OS493_013073-T1 | PROTEIN TORNADO 1 |
OS493_013074-T1 | |
OS493_013075-T1 | FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD |
OS493_013076-T1 | |
OS493_013077-T1 | |
OS493_013078-T1 | |
OS493_013079-T1 | |
OS493_013080-T1 | FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD |
OS493_013081-T1 | |
OS493_013082-T1 | DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5 |
OS493_013083-T1 | |
OS493_013084-T1 | HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE |
OS493_013085-T1 | HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE |
OS493_013086-T1 | TETHER CONTAINING UBX DOMAIN FOR GLUT4 |
OS493_013087-T1 | AXIN |
OS493_013088-T1 | AXIN |