About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_013415-T1CADHERIN-87A
OS493_013416-T1FAT ATYPICAL CADHERIN-RELATED
OS493_013417-T1
OS493_013418-T1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
OS493_013419-T1
OS493_013420-T1
OS493_013421-T1
OS493_013422-T1VON WILLEBRAND FACTOR C AND EGF DOMAIN-CONTAINING PROTEIN
OS493_013423-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
OS493_013424-T1CADHERIN-23
OS493_013425-T1
OS493_013426-T1NOTCH LIGAND FAMILY MEMBER
OS493_013427-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
OS493_013428-T1
OS493_013429-T1
OS493_013430-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
OS493_013431-T1
OS493_013432-T1
OS493_013433-T1
OS493_013434-T1
OS493_013435-T1
OS493_013438-T1
OS493_013439-T1AP ENDONUCLEASE
OS493_013440-T1HISTONE DEACETYLASE-LIKE PROTEIN
OS493_013441-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_013442-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_013443-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_013445-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_013446-T1
OS493_013447-T1
OS493_013448-T1
OS493_013449-T1
OS493_013450-T1CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P
OS493_013451-T1CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
OS493_013453-T1WD REPEAT CONTAINING PROTEIN 3 WDR3
OS493_013454-T1AMELOGENIN
OS493_013456-T1
OS493_013459-T1BATTENIN
OS493_013460-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_013461-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
OS493_013462-T1MONOCARBOXYLATE TRANSPORTER
OS493_013463-T1RFWD3 PROTEIN
OS493_013464-T1GLUCOSE-6-PHOSPHATE EXCHANGER SLC37A4
OS493_013465-T1
OS493_013466-T1G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER
OS493_013467-T1FIDO DOMAIN-CONTAINING PROTEIN DDB_G0283145
OS493_013468-T1SORTING NEXIN
OS493_013469-T1RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED
OS493_013470-T1
OS493_013471-T1PROTEIN VASCULAR ASSOCIATED DEATH 1, CHLOROPLASTIC
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