Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_013579-T1 | TRANSMEMBRANE PROTEIN 101 |
OS493_013580-T1 | CONDENSIN |
OS493_013581-T1 | CONDENSIN |
OS493_013582-T1 | |
OS493_013583-T1 | |
OS493_013584-T1 | |
OS493_013585-T1 | IONOTROPIC GLUTAMATE RECEPTOR |
OS493_013586-T1 | EG:EG0003.4 PROTEIN-RELATED |
OS493_013587-T1 | AMINO ACID TRANSPORTER |
OS493_013588-T1 | RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B |
OS493_013590-T1 | CHONDROITIN SYNTHASE |
OS493_013591-T1 | CHONDROITIN SYNTHASE |
OS493_013593-T1 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
OS493_013594-T1 | FIMBRIN/PLASTIN |
OS493_013595-T1 | FIMBRIN/PLASTIN |
OS493_013596-T1 | FIMBRIN/PLASTIN |
OS493_013597-T1 | - |
OS493_013598-T1 | EPIDERMAL GROWTH FACTOR RECEPTOR KINASE SUBSTRATE EPS8-RELATED PROTEIN |
OS493_013599-T1 | BETA-1,4-GLUCURONYLTRANSFERASE 1 |
OS493_013600-T1 | |
OS493_013601-T1 | GOLGI SNARE BET1-RELATED |
OS493_013602-T1 | CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE |
OS493_013603-T1 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
OS493_013604-T1 | SLR5058 PROTEIN |
OS493_013605-T1 | |
OS493_013606-T1 | |
OS493_013607-T1 | |
OS493_013608-T1 | |
OS493_013610-T1 | NACHT, LRR AND CARD DOMAINS-CONTAINING |
OS493_013611-T1 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
OS493_013612-T1 | PROTEIN PHOSPHATASE INHIBITOR |
OS493_013614-T1 | |
OS493_013615-T1 | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS |
OS493_013616-T1 | |
OS493_013617-T1 | DYNEIN ASSEMBLY FACTOR 3, AXONEMAL |
OS493_013618-T1 | FIBROUS SHEATH INTERACTING PROTEIN 2 |
OS493_013619-T1 | PROTEIN CBG12474 |
OS493_013620-T1 | PLAKOPHILLIN-RELATED |
OS493_013621-T1 | |
OS493_013622-T1 | - |
OS493_013623-T1 | ALPHA-2-MACROGLOBULIN RECEPTOR-ASSOCIATED PROTEIN |
OS493_013624-T1 | FOLLISTATIN-RELATED |
OS493_013625-T1 | |
OS493_013626-T1 | UNCHARACTERIZED |
OS493_013627-T1 | 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA GUANINE-N 7 - -METHYLTRANSFERASE |
OS493_013628-T1 | NATURAL KILLER CELL-SPECIFIC ANTIGEN KLIP1 |
OS493_013629-T1 | |
OS493_013631-T1 | |
OS493_013632-T1 | FLAP ENDONUCLEASE FAMILY MEMBER |
OS493_013633-T1 | PROTEIN CBG03580 |