About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_013579-T1TRANSMEMBRANE PROTEIN 101
OS493_013580-T1CONDENSIN
OS493_013581-T1CONDENSIN
OS493_013582-T1
OS493_013583-T1
OS493_013584-T1
OS493_013585-T1IONOTROPIC GLUTAMATE RECEPTOR
OS493_013586-T1EG:EG0003.4 PROTEIN-RELATED
OS493_013587-T1AMINO ACID TRANSPORTER
OS493_013588-T1RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B
OS493_013590-T1CHONDROITIN SYNTHASE
OS493_013591-T1CHONDROITIN SYNTHASE
OS493_013593-T1PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
OS493_013594-T1FIMBRIN/PLASTIN
OS493_013595-T1FIMBRIN/PLASTIN
OS493_013596-T1FIMBRIN/PLASTIN
OS493_013597-T1-
OS493_013598-T1EPIDERMAL GROWTH FACTOR RECEPTOR KINASE SUBSTRATE EPS8-RELATED PROTEIN
OS493_013599-T1BETA-1,4-GLUCURONYLTRANSFERASE 1
OS493_013600-T1
OS493_013601-T1GOLGI SNARE BET1-RELATED
OS493_013602-T1CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE
OS493_013603-T1NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
OS493_013604-T1SLR5058 PROTEIN
OS493_013605-T1
OS493_013606-T1
OS493_013607-T1
OS493_013608-T1
OS493_013610-T1NACHT, LRR AND CARD DOMAINS-CONTAINING
OS493_013611-T1NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
OS493_013612-T1PROTEIN PHOSPHATASE INHIBITOR
OS493_013614-T1
OS493_013615-T1HOMEOBOX PROTEIN TRANSCRIPTION FACTORS
OS493_013616-T1
OS493_013617-T1DYNEIN ASSEMBLY FACTOR 3, AXONEMAL
OS493_013618-T1FIBROUS SHEATH INTERACTING PROTEIN 2
OS493_013619-T1PROTEIN CBG12474
OS493_013620-T1PLAKOPHILLIN-RELATED
OS493_013621-T1
OS493_013622-T1-
OS493_013623-T1ALPHA-2-MACROGLOBULIN RECEPTOR-ASSOCIATED PROTEIN
OS493_013624-T1FOLLISTATIN-RELATED
OS493_013625-T1
OS493_013626-T1UNCHARACTERIZED
OS493_013627-T13-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA GUANINE-N 7 - -METHYLTRANSFERASE
OS493_013628-T1NATURAL KILLER CELL-SPECIFIC ANTIGEN KLIP1
OS493_013629-T1
OS493_013631-T1
OS493_013632-T1FLAP ENDONUCLEASE FAMILY MEMBER
OS493_013633-T1PROTEIN CBG03580
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