About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_013689-T1PR DOMAIN ZINC FINGER PROTEIN
OS493_013690-T1RHO FAMILY GTPASE
OS493_013691-T1
OS493_013692-T1
OS493_013693-T1
OS493_013694-T1
OS493_013695-T1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
OS493_013696-T1CHLORIDE INTRACELLULAR CHANNEL, ISOFORM A
OS493_013697-T1
OS493_013698-T1CHLORIDE INTRACELLULAR CHANNEL, ISOFORM A
OS493_013699-T1MUCIN/PORIMIN
OS493_013701-T1PROFILIN
OS493_013702-T1FAMILY WITH SEQUENCE SIMILARITY 228 MEMBER A
OS493_013704-T1U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM10
OS493_013705-T1FANCONI ANEMIA GROUP G PROTEIN FAMILY MEMBER
OS493_013706-T1
OS493_013707-T1POLYCOMB PROTEIN
OS493_013708-T1
OS493_013709-T1OLIGOPEPTIDE TRANSPORTER-RELATED
OS493_013710-T1UPF0041 BRAIN PROTEIN 44-RELATED
OS493_013711-T1PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED
OS493_013712-T1FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
OS493_013713-T1
OS493_013714-T1RNA PROCESSING PROTEIN LD23810P
OS493_013715-T1AGAP004733-PA
OS493_013716-T1ASSOCIATE OF C-MYC AMY-1
OS493_013717-T1GLUTAREDOXIN-LIKE PROTEIN C5ORF63 HOMOLOG
OS493_013718-T1SUPEROXIDE DISMUTASE CU-ZN -RELATED
OS493_013719-T1SUPEROXIDE DISMUTASE CU-ZN -RELATED
OS493_013720-T1MACOILIN
OS493_013721-T1FATTY ACID SYNTHASE
OS493_013722-T1FATTY ACID SYNTHASE
OS493_013723-T1
OS493_013724-T1PATCHED-RELATED
OS493_013725-T1PATCHED-RELATED
OS493_013726-T1PATCHED-RELATED
OS493_013727-T1PATCHED-RELATED
OS493_013728-T1
OS493_013729-T1
OS493_013731-T1FATTY ACID SYNTHASE
OS493_013732-T1FATTY ACID SYNTHASE
OS493_013733-T1PATCHED-RELATED
OS493_013734-T1FATTY ACID SYNTHASE
OS493_013735-T1PATCHED-RELATED
OS493_013736-T1
OS493_013739-T1GOLGI-ASSOCIATED PDZ AND COILED-COIL MOTIF-CONTAINING
OS493_013740-T1SOX TRANSCRIPTION FACTOR
OS493_013741-T1
OS493_013742-T1PROTEIN MMS22-LIKE
OS493_013743-T1PROTEIN MMS22-LIKE
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