Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_013744-T1 | PROTEIN MMS22-LIKE |
OS493_013745-T1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN |
OS493_013746-T1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN |
OS493_013747-T1 | PALMITOYLTRANSFERASE ZDHHC16 |
OS493_013748-T1 | PALMITOYLTRANSFERASE ZDHHC16 |
OS493_013749-T1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
OS493_013750-T1 | GLUTATHIONE HYDROLASE |
OS493_013751-T1 | |
OS493_013752-T1 | |
OS493_013753-T1 | |
OS493_013754-T1 | |
OS493_013756-T1 | |
OS493_013757-T1 | PRESEQUENCE PROTEASE |
OS493_013758-T1 | PRESEQUENCE PROTEASE |
OS493_013759-T1 | PRESEQUENCE PROTEASE |
OS493_013760-T1 | UNCHARACTERIZED DUF1167 |
OS493_013761-T1 | UNCHARACTERIZED DUF1167 |
OS493_013762-T1 | |
OS493_013763-T1 | CENTROSOMAL PROTEIN OF 85 KDA |
OS493_013764-T1 | |
OS493_013765-T1 | |
OS493_013766-T1 | |
OS493_013767-T1 | NOTCH LIGAND FAMILY MEMBER |
OS493_013768-T1 | UNCHARACTERIZED DUF1167 |
OS493_013769-T1 | |
OS493_013770-T1 | UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN |
OS493_013771-T1 | UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN |
OS493_013772-T1 | UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN |
OS493_013774-T1 | |
OS493_013775-T1 | ION_TRANS DOMAIN-CONTAINING PROTEIN |
OS493_013776-T1 | |
OS493_013777-T1 | MOLTING PROTEIN MLT-4 |
OS493_013778-T1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
OS493_013779-T1 | AMINOTRANSFERASE CLASS V |
OS493_013780-T1 | AMINOTRANSFERASE CLASS V |
OS493_013781-T1 | PROTEIN ARGININE N-METHYLTRANSFERASE |
OS493_013782-T1 | PROTEIN ARGININE N-METHYLTRANSFERASE |
OS493_013783-T1 | PROTEIN C9ORF135 |
OS493_013784-T1 | |
OS493_013785-T1 | GAF/PUTATIVE CYTOSKELETAL PROTEIN |
OS493_013786-T1 | L-CYSTEINE DESULFHYDRASE |
OS493_013787-T1 | ANKYRIN REPEAT-CONTAINING |
OS493_013788-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
OS493_013789-T1 | ION_TRANS DOMAIN-CONTAINING PROTEIN |
OS493_013790-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
OS493_013791-T1 | ANKYRIN REPEAT PROTEIN |
OS493_013792-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
OS493_013793-T1 | ION_TRANS DOMAIN-CONTAINING PROTEIN |
OS493_013794-T1 | MOLTING PROTEIN MLT-4 |
OS493_013795-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |