About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_013744-T1PROTEIN MMS22-LIKE
OS493_013745-T1HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN
OS493_013746-T1HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN
OS493_013747-T1PALMITOYLTRANSFERASE ZDHHC16
OS493_013748-T1PALMITOYLTRANSFERASE ZDHHC16
OS493_013749-T1MAP/MICROTUBULE AFFINITY-REGULATING KINASE
OS493_013750-T1GLUTATHIONE HYDROLASE
OS493_013751-T1
OS493_013752-T1
OS493_013753-T1
OS493_013754-T1
OS493_013756-T1
OS493_013757-T1PRESEQUENCE PROTEASE
OS493_013758-T1PRESEQUENCE PROTEASE
OS493_013759-T1PRESEQUENCE PROTEASE
OS493_013760-T1UNCHARACTERIZED DUF1167
OS493_013761-T1UNCHARACTERIZED DUF1167
OS493_013762-T1
OS493_013763-T1CENTROSOMAL PROTEIN OF 85 KDA
OS493_013764-T1
OS493_013765-T1
OS493_013766-T1
OS493_013767-T1NOTCH LIGAND FAMILY MEMBER
OS493_013768-T1UNCHARACTERIZED DUF1167
OS493_013769-T1
OS493_013770-T1UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN
OS493_013771-T1UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN
OS493_013772-T1UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN
OS493_013774-T1
OS493_013775-T1ION_TRANS DOMAIN-CONTAINING PROTEIN
OS493_013776-T1
OS493_013777-T1MOLTING PROTEIN MLT-4
OS493_013778-T1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
OS493_013779-T1AMINOTRANSFERASE CLASS V
OS493_013780-T1AMINOTRANSFERASE CLASS V
OS493_013781-T1PROTEIN ARGININE N-METHYLTRANSFERASE
OS493_013782-T1PROTEIN ARGININE N-METHYLTRANSFERASE
OS493_013783-T1PROTEIN C9ORF135
OS493_013784-T1
OS493_013785-T1GAF/PUTATIVE CYTOSKELETAL PROTEIN
OS493_013786-T1L-CYSTEINE DESULFHYDRASE
OS493_013787-T1ANKYRIN REPEAT-CONTAINING
OS493_013788-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
OS493_013789-T1ION_TRANS DOMAIN-CONTAINING PROTEIN
OS493_013790-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
OS493_013791-T1ANKYRIN REPEAT PROTEIN
OS493_013792-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
OS493_013793-T1ION_TRANS DOMAIN-CONTAINING PROTEIN
OS493_013794-T1MOLTING PROTEIN MLT-4
OS493_013795-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
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