About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_005504-T1SACSIN
OS493_005505-T1SACSIN
OS493_005506-T1SACSIN
OS493_005507-T1SACSIN
OS493_005508-T1SACSIN
OS493_005509-T1FRG1 PROTEIN
OS493_005510-T1ZGC:174356
OS493_005511-T1ARYLSULFATASE FAMILY MEMBER
OS493_005512-T1CALCIUM BINDING PROTEIN
OS493_005513-T1CALCIUM BINDING PROTEIN
OS493_005514-T1ATR-INTERACTING PROTEIN
OS493_005515-T1ATR-INTERACTING PROTEIN
OS493_005516-T1HIGH MOBILITY GROUP PROTEIN DSP1
OS493_005517-T1POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
OS493_005518-T1UPSTREAM BINDING TRANSCRIPTION FACTOR
OS493_005519-T1POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
OS493_005520-T1-
OS493_005521-T1GOLGIN-84
OS493_005522-T1SODIUM/CALCIUM EXCHANGER
OS493_005523-T1SOLUBLE NSF ATTACHMENT PROTEIN SNAP
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