Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_013899-T1 | PARAOXONASE |
OS493_013900-T1 | |
OS493_013901-T1 | GERANYLGERANYL PYROPHOSPHATE SYNTHASE |
OS493_013902-T1 | PROPERDIN |
OS493_013903-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_013904-T1 | PROPERDIN |
OS493_013905-T1 | UNCHARACTERIZED |
OS493_013906-T1 | PROPERDIN |
OS493_013907-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_013908-T1 | UNCHARACTERIZED |
OS493_013909-T1 | SODIUM/NUCLEOSIDE COTRANSPORTER |
OS493_013910-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 91 |
OS493_013911-T1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 |
OS493_013912-T1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
OS493_013913-T1 | |
OS493_013914-T1 | - |
OS493_013915-T1 | - |
OS493_013916-T1 | CHARGED MULTIVESICULAR BODY PROTEIN |
OS493_013917-T1 | |
OS493_013918-T1 | |
OS493_013919-T1 | |
OS493_013920-T1 | |
OS493_013921-T1 | |
OS493_013922-T1 | 28S RIBOSOMAL PROTEIN S15, MITOCHONDRIAL |
OS493_013923-T1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
OS493_013924-T1 | FGFR1 ONCOGENE PARTNER/LISH DOMAIN-CONTAINING PROTEIN |
OS493_013925-T1 | SCAVENGER RECEPTOR CLASS F |
OS493_013926-T1 | RIBOSOMAL PROTEIN L19 |
OS493_013927-T1 | CELL DIVISION CYCLE 5-LIKE PROTEIN |
OS493_013928-T1 | MALE FERTILITY FACTOR KL5 |
OS493_013929-T1 | |
OS493_013930-T1 | |
OS493_013931-T1 | |
OS493_013932-T1 | |
OS493_013933-T1 | MALE FERTILITY FACTOR KL5 |
OS493_013934-T1 | MALE FERTILITY FACTOR KL5 |
OS493_013935-T1 | MALE FERTILITY FACTOR KL5 |
OS493_013937-T1 | MALE FERTILITY FACTOR KL5 |
OS493_013938-T1 | MALE FERTILITY FACTOR KL5 |
OS493_013939-T1 | DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN |
OS493_013940-T1 | DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN |
OS493_013941-T1 | DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN |
OS493_013942-T1 | |
OS493_013943-T1 | |
OS493_013944-T1 | |
OS493_013945-T1 | ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 |
OS493_013946-T1 | |
OS493_013947-T1 | SCAVENGER RECEPTOR CLASS F |
OS493_013948-T1 | |
OS493_013949-T1 | CHONDROITIN SYNTHASE |