About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_014004-T1AAA-FAMILY ATPASE
OS493_014005-T1CONDENSIN
OS493_014006-T1
OS493_014007-T1
OS493_014008-T1
OS493_014009-T1CONDENSIN
OS493_014010-T1INNER MEMBRANE TRANSPORTER YGJI-RELATED
OS493_014011-T1INNER MEMBRANE TRANSPORTER YGJI-RELATED
OS493_014012-T1INNER MEMBRANE TRANSPORTER YGJI-RELATED
OS493_014013-T1
OS493_014014-T1
OS493_014015-T1INNER MEMBRANE TRANSPORTER YGJI-RELATED
OS493_014016-T1
OS493_014017-T1LATROPHILIN RECEPTOR-LIKE PROTEIN A
OS493_014018-T1SYNAPTOTAGMIN 14, ISOFORM D
OS493_014019-T1
OS493_014020-T1CONDENSIN
OS493_014021-T1
OS493_014022-T1SYNAPTOTAGMIN 14, ISOFORM D
OS493_014024-T1PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED
OS493_014025-T1TRANSLOCATION PROTEIN SEC62
OS493_014026-T1ATROPHIN-RELATED
OS493_014027-T1D-GLUCURONYL C5-EPIMERASE
OS493_014028-T1HYALURONIDASE
OS493_014029-T1
OS493_014030-T1PX DOMAIN-CONTAINING PROTEIN
OS493_014031-T1
OS493_014032-T1
OS493_014033-T1
OS493_014034-T1MULTICOPPER OXIDASE-RELATED
OS493_014035-T1
OS493_014036-T1-
OS493_014037-T1SH2-SH3 ADAPTOR PROTEIN-RELATED
OS493_014038-T1GALACTOSE-3-O-SULFOTRANSFERASE
OS493_014039-T1UNCHARACTERIZED
OS493_014040-T1KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
OS493_014041-T1
OS493_014042-T1
OS493_014043-T1GALACTOSE-3-O-SULFOTRANSFERASE
OS493_014044-T1KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
OS493_014047-T1
OS493_014048-T1
OS493_014049-T1
OS493_014050-T1
OS493_014052-T1
OS493_014053-T1
OS493_014054-T1
OS493_014055-T1
OS493_014056-T1
OS493_014057-T1
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