About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_013634-T1
OS493_013635-T1FLAP ENDONUCLEASE FAMILY MEMBER
OS493_013636-T1
OS493_013637-T1ADIPOR/PROGESTIN RECEPTOR-RELATED
OS493_013638-T1FCH AND DOUBLE SH3 DOMAINS PROTEIN
OS493_013639-T1
OS493_013640-T1
OS493_013641-T1NXPE FAMILY MEMBER
OS493_013642-T1GUANYLYL CYCLASE
OS493_013643-T1GUANYLYL CYCLASE
OS493_013644-T1NATRIURETIC PEPTIDE RECEPTOR 3-RELATED
OS493_013645-T1
OS493_013646-T1UNCHARACTERIZED
OS493_013647-T1EXPRESSED PROTEIN
OS493_013648-T1
OS493_013649-T1
OS493_013651-T1
OS493_013652-T1
OS493_013653-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED
OS493_013654-T1-
OS493_013655-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_013656-T1E3 UBIQUITIN-PROTEIN LIGASE SIAH2
OS493_013657-T1
OS493_013658-T1FORKHEAD BOX PROTEIN O
OS493_013659-T1SECRETED MODULAR CALCIUM-BINDING PROTEIN
OS493_013660-T1SECRETED MODULAR CALCIUM-BINDING PROTEIN
OS493_013661-T1
OS493_013662-T1S-LAYER PROTEIN
OS493_013663-T1CHONDROITIN SYNTHASE
OS493_013664-T1PENTRAXIN
OS493_013666-T1
OS493_013668-T1
OS493_013670-T1IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG
OS493_013671-T1
OS493_013673-T1PR DOMAIN ZINC FINGER PROTEIN
OS493_013674-T1FACIOGENITAL DYSPLASIA PROTEIN
OS493_013675-T1T-CELL ACTIVATION RHO GTPASE ACTIVATING PROTEIN-RELATED
OS493_013676-T1T-CELL ACTIVATION RHO GTPASE ACTIVATING PROTEIN-RELATED
OS493_013677-T1ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3.
OS493_013678-T1ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3.
OS493_013679-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER
OS493_013680-T1
OS493_013681-T1
OS493_013682-T1TRIHELIX TRANSCRIPTION FACTOR ASIL2
OS493_013683-T1UBIQUILIN
OS493_013684-T1MYOSIN LIGHT CHAIN 1, 3
OS493_013685-T1PROTEIN ENHANCER OF SEVENLESS 2B
OS493_013686-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_013687-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_013688-T1
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