About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_013527-T1
OS493_013528-T1
OS493_013529-T1
OS493_013530-T1
OS493_013531-T1
OS493_013532-T1
OS493_013533-T1
OS493_013534-T1
OS493_013535-T1OVOCHYMASE-RELATED
OS493_013536-T1
OS493_013537-T1ENDOGLIN/TGF-BETA RECEPTOR TYPE III
OS493_013538-T1ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 7
OS493_013539-T1CYTOSOLIC RESINIFERATOXIN BINDING PROTEIN RBP-26
OS493_013540-T1
OS493_013541-T1
OS493_013542-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_013543-T1NETRIN RECEPTOR UNC5
OS493_013544-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_013545-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_013546-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_013547-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_013548-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_013549-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_013550-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_013551-T1PREFOLDIN SUBUNIT 1-RELATED
OS493_013552-T1-
OS493_013553-T1MULTICOPPER OXIDASE-RELATED
OS493_013554-T1MULTICOPPER OXIDASE-RELATED
OS493_013555-T1MULTICOPPER OXIDASE-RELATED
OS493_013556-T1
OS493_013557-T1
OS493_013558-T1
OS493_013559-T1
OS493_013561-T1USP DOMAIN-CONTAINING PROTEIN
OS493_013562-T1PLAKOPHILLIN-RELATED
OS493_013563-T1PLAKOPHILLIN-RELATED
OS493_013564-T1CONDENSIN
OS493_013565-T1
OS493_013566-T1CONDENSIN
OS493_013568-T1
OS493_013569-T1ZINC FINGER PROTEIN
OS493_013570-T1
OS493_013571-T1USP DOMAIN-CONTAINING PROTEIN
OS493_013572-T1HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN
OS493_013573-T1EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED
OS493_013574-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
OS493_013575-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
OS493_013576-T1UPF0561 PROTEIN C2ORF68
OS493_013577-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_013578-T1FIBRONECTIN TYPE 3 AND ANKYRIN REPEAT DOMAINS PROTEIN 1
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