Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_013527-T1 | |
OS493_013528-T1 | |
OS493_013529-T1 | |
OS493_013530-T1 | |
OS493_013531-T1 | |
OS493_013532-T1 | |
OS493_013533-T1 | |
OS493_013534-T1 | |
OS493_013535-T1 | OVOCHYMASE-RELATED |
OS493_013536-T1 | |
OS493_013537-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_013538-T1 | ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 7 |
OS493_013539-T1 | CYTOSOLIC RESINIFERATOXIN BINDING PROTEIN RBP-26 |
OS493_013540-T1 | |
OS493_013541-T1 | |
OS493_013542-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
OS493_013543-T1 | NETRIN RECEPTOR UNC5 |
OS493_013544-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_013545-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_013546-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_013547-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_013548-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_013549-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_013550-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_013551-T1 | PREFOLDIN SUBUNIT 1-RELATED |
OS493_013552-T1 | - |
OS493_013553-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_013554-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_013555-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_013556-T1 | |
OS493_013557-T1 | |
OS493_013558-T1 | |
OS493_013559-T1 | |
OS493_013561-T1 | USP DOMAIN-CONTAINING PROTEIN |
OS493_013562-T1 | PLAKOPHILLIN-RELATED |
OS493_013563-T1 | PLAKOPHILLIN-RELATED |
OS493_013564-T1 | CONDENSIN |
OS493_013565-T1 | |
OS493_013566-T1 | CONDENSIN |
OS493_013568-T1 | |
OS493_013569-T1 | ZINC FINGER PROTEIN |
OS493_013570-T1 | |
OS493_013571-T1 | USP DOMAIN-CONTAINING PROTEIN |
OS493_013572-T1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN |
OS493_013573-T1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED |
OS493_013574-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C |
OS493_013575-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C |
OS493_013576-T1 | UPF0561 PROTEIN C2ORF68 |
OS493_013577-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
OS493_013578-T1 | FIBRONECTIN TYPE 3 AND ANKYRIN REPEAT DOMAINS PROTEIN 1 |