About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_014323-T1
OS493_014324-T1
OS493_014325-T1UBIQUITIN-CONJUGATING ENZYME E2
OS493_014326-T1CENTROSOMAL PROTEIN OF 128 KDA
OS493_014327-T1UBIQUITINATION FACTOR E4
OS493_014328-T1CENTROSOMAL PROTEIN OF 128 KDA
OS493_014329-T1TRYPSIN-RELATED
OS493_014330-T1-
OS493_014331-T1-
OS493_014332-T1CHYMOTRYPSIN-RELATED
OS493_014333-T1CENTROSOMAL PROTEIN OF 128 KDA
OS493_014334-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_014335-T1CYTOKINE RECEPTOR
OS493_014336-T1PROTEIN SIDEKICK
OS493_014337-T1COMM DOMAIN-CONTAINING PROTEIN 4-8 FAMILY MEMBER
OS493_014338-T1SIGNAL RECOGNITION PARTICLE 14 KD PROTEIN
OS493_014339-T1
OS493_014340-T1
OS493_014341-T1
OS493_014342-T1
OS493_014343-T1WD REPEAT-CONTAINING PROTEIN 43
OS493_014344-T1-
OS493_014345-T1CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A
OS493_014346-T1HOMEOBOX PROTEIN MSX
OS493_014347-T1HOMEOBOX PROTEIN MSX
OS493_014348-T1HOMEOBOX PROTEIN MSX
OS493_014349-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_014350-T1HOMEOBOX PROTEIN NKX
OS493_014351-T1HOMEOBOX PROTEIN NKX
OS493_014352-T1HOMEOBOX PROTEIN NKX
OS493_014353-T1HOMEOBOX PROTEIN NKX
OS493_014354-T1HOMEOBOX PROTEIN NKX
OS493_014355-T1BETAINE--HOMOCYSTEINE S-METHYLTRANSFERASE 1
OS493_014356-T1BETAINE--HOMOCYSTEINE S-METHYLTRANSFERASE 1
OS493_014357-T1BETAINE--HOMOCYSTEINE S-METHYLTRANSFERASE 1
OS493_014358-T1
OS493_014359-T1
OS493_014360-T1
OS493_014361-T1
OS493_014362-T1
OS493_014363-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
OS493_014364-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
OS493_014365-T1
OS493_014369-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
OS493_014370-T1RRNA-PROCESSING PROTEIN EFG1
OS493_014371-T1V-TYPE PROTON ATPASE SUBUNIT H
OS493_014372-T1KICSTOR COMPLEX PROTEIN C12ORF66
OS493_014373-T1ENDOGLIN/TGF-BETA RECEPTOR TYPE III
OS493_014374-T1
OS493_014375-T1ENDOGLIN/TGF-BETA RECEPTOR TYPE III
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