Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_014376-T1 | REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN |
OS493_014377-T1 | REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN |
OS493_014378-T1 | ADENYLATE CYCLASE TYPE 1 |
OS493_014379-T1 | ADENYLATE CYCLASE TYPE 1 |
OS493_014380-T1 | |
OS493_014381-T1 | SCHLAFEN |
OS493_014382-T1 | |
OS493_014383-T1 | 60S ACIDIC RIBOSOMAL PROTEIN P1 |
OS493_014384-T1 | TUBULIN |
OS493_014385-T1 | RIBOSOMAL PROTEIN L30 |
OS493_014386-T1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
OS493_014387-T1 | C2H2 ZINC FINGER CGI-62-RELATED |
OS493_014388-T1 | SOLUTE CARRIER FAMILY 22 MEMBER 18 |
OS493_014389-T1 | SOLUTE CARRIER FAMILY 22 MEMBER 18 |
OS493_014390-T1 | TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT A |
OS493_014391-T1 | |
OS493_014392-T1 | DYNACTIN P62 SUBUNIT |
OS493_014393-T1 | ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATED |
OS493_014394-T1 | ATP-DEPENDENT RNA HELICASE |
OS493_014395-T1 | ATP-DEPENDENT RNA HELICASE |
OS493_014396-T1 | |
OS493_014397-T1 | ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE |
OS493_014398-T1 | |
OS493_014399-T1 | EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED |
OS493_014400-T1 | ACETYLGLUCOSAMINYLTRANSFERASE |
OS493_014401-T1 | |
OS493_014402-T1 | |
OS493_014403-T1 | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED |
OS493_014404-T1 | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED |
OS493_014406-T1 | |
OS493_014407-T1 | ENOYL-COA HYDRATASE |
OS493_014408-T1 | ENOYL-COA HYDRATASE |
OS493_014409-T1 | ENOYL-COA HYDRATASE |
OS493_014410-T1 | PHD FINGER PROTEIN |
OS493_014411-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_014412-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
OS493_014413-T1 | DNA-DIRECTED RNA POLYMERASE |
OS493_014414-T1 | |
OS493_014415-T1 | RAS-LIKE FAMILY MEMBER 11 |
OS493_014416-T1 | PORCUPINE |
OS493_014417-T1 | PORCUPINE |
OS493_014418-T1 | |
OS493_014419-T1 | |
OS493_014420-T1 | PORCUPINE |
OS493_014421-T1 | |
OS493_014422-T1 | |
OS493_014423-T1 | |
OS493_014424-T1 | TNF RECEPTOR ASSOCIATED FACTOR |
OS493_014425-T1 | TNF RECEPTOR ASSOCIATED FACTOR |
OS493_014426-T1 |