About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_014376-T1REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN
OS493_014377-T1REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN
OS493_014378-T1ADENYLATE CYCLASE TYPE 1
OS493_014379-T1ADENYLATE CYCLASE TYPE 1
OS493_014380-T1
OS493_014381-T1SCHLAFEN
OS493_014382-T1
OS493_014383-T160S ACIDIC RIBOSOMAL PROTEIN P1
OS493_014384-T1TUBULIN
OS493_014385-T1RIBOSOMAL PROTEIN L30
OS493_014386-T1TANDEM PH DOMAIN CONTAINING PROTEIN
OS493_014387-T1C2H2 ZINC FINGER CGI-62-RELATED
OS493_014388-T1SOLUTE CARRIER FAMILY 22 MEMBER 18
OS493_014389-T1SOLUTE CARRIER FAMILY 22 MEMBER 18
OS493_014390-T1TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT A
OS493_014391-T1
OS493_014392-T1DYNACTIN P62 SUBUNIT
OS493_014393-T1ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATED
OS493_014394-T1ATP-DEPENDENT RNA HELICASE
OS493_014395-T1ATP-DEPENDENT RNA HELICASE
OS493_014396-T1
OS493_014397-T1ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE
OS493_014398-T1
OS493_014399-T1EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED
OS493_014400-T1ACETYLGLUCOSAMINYLTRANSFERASE
OS493_014401-T1
OS493_014402-T1
OS493_014403-T1LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED
OS493_014404-T1LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED
OS493_014406-T1
OS493_014407-T1ENOYL-COA HYDRATASE
OS493_014408-T1ENOYL-COA HYDRATASE
OS493_014409-T1ENOYL-COA HYDRATASE
OS493_014410-T1PHD FINGER PROTEIN
OS493_014411-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_014412-T1METABOTROPIC GLUTAMATE RECEPTOR
OS493_014413-T1DNA-DIRECTED RNA POLYMERASE
OS493_014414-T1
OS493_014415-T1RAS-LIKE FAMILY MEMBER 11
OS493_014416-T1PORCUPINE
OS493_014417-T1PORCUPINE
OS493_014418-T1
OS493_014419-T1
OS493_014420-T1PORCUPINE
OS493_014421-T1
OS493_014422-T1
OS493_014423-T1
OS493_014424-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_014425-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_014426-T1
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