About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_014478-T1
OS493_014479-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
OS493_014480-T1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP7/14
OS493_014481-T1
OS493_014482-T1AGAP008005-PA
OS493_014483-T1UNCHARACTERIZED
OS493_014484-T1UNCHARACTERIZED
OS493_014485-T1UNCHARACTERIZED
OS493_014486-T1CAMP-RESPONSIVE ELEMENT-BINDING PROTEIN-LIKE 2
OS493_014487-T1ZINC FINGER PROTEIN 385B-LIKE
OS493_014488-T1INTERFERON REGULATORY FACTOR
OS493_014489-T1PHD FINGER PROTEIN 20-RELATED
OS493_014490-T1PHD FINGER PROTEIN 20-RELATED
OS493_014491-T1
OS493_014492-T1
OS493_014494-T1PROTEIN DISULFIDE-ISOMERASE A6
OS493_014495-T1SORTING NEXIN 17 AND 27
OS493_014496-T1
OS493_014497-T1T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN
OS493_014498-T1
OS493_014499-T1UNCHARACTERIZED
OS493_014500-T1VITAMIN K-DEPENDENT GAMMA-CARBOXYLASE
OS493_014501-T1
OS493_014502-T1BLUE CHEESE
OS493_014503-T1BLUE CHEESE
OS493_014504-T1BLUE CHEESE
OS493_014506-T1BLUE CHEESE
OS493_014507-T1BLUE CHEESE
OS493_014508-T1BLUE CHEESE
OS493_014510-T1UNCHARACTERIZED
OS493_014511-T1SH3 DOMAIN-CONTAINING
OS493_014512-T1FATTY ACID ACYL TRANSFERASE-RELATED
OS493_014513-T1FATTY ACID ACYL TRANSFERASE-RELATED
OS493_014514-T1
OS493_014515-T1
OS493_014516-T1
OS493_014517-T1BOLA TRANSCRIPTION REGULATOR
OS493_014518-T1CHAPERONIN
OS493_014519-T1CHAPERONIN
OS493_014520-T1
OS493_014521-T1MAINTENANCE OF TELOMOERE CAPPING
OS493_014522-T1
OS493_014523-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
OS493_014524-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
OS493_014525-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
OS493_014526-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
OS493_014527-T1PROPERDIN
OS493_014528-T1
OS493_014529-T1
OS493_014531-T1DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
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