Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_014638-T1 | |
OS493_014639-T1 | IP01015P-RELATED |
OS493_014640-T1 | ZINC FINGER PROTEIN |
OS493_014641-T1 | ZINC FINGER PROTEIN ZIC AND GLI |
OS493_014642-T1 | |
OS493_014643-T1 | |
OS493_014644-T1 | DNA REPAIR PROTEIN SWI5 HOMOLOG |
OS493_014645-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 151 |
OS493_014646-T1 | |
OS493_014647-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_014648-T1 | |
OS493_014649-T1 | FE2OG DIOXYGENASE DOMAIN-CONTAINING PROTEIN |
OS493_014650-T1 | ATP-DEPENDENT RNA HELICASE |
OS493_014651-T1 | ATP-DEPENDENT RNA HELICASE |
OS493_014652-T1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
OS493_014653-T1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
OS493_014654-T1 | - |
OS493_014655-T1 | CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING |
OS493_014656-T1 | |
OS493_014657-T1 | UNCHARACTERIZED |
OS493_014658-T1 | UBIQUITIN-ASSOCIATED DOMAIN-CONTAINING PROTEIN 1 |
OS493_014659-T1 | |
OS493_014660-T1 | FLAP ENDONUCLEASE FAMILY MEMBER |
OS493_014661-T1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
OS493_014662-T1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
OS493_014663-T1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
OS493_014664-T1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
OS493_014666-T1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
OS493_014667-T1 | PHOSPHOLIPASE A-2-ACTIVATING PROTEIN |
OS493_014668-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_014669-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_014670-T1 | |
OS493_014671-T1 | AP1 GAMMA SUBUNIT BINDING PROTEIN 1 |
OS493_014672-T1 | AP1 GAMMA SUBUNIT BINDING PROTEIN 1 |
OS493_014673-T1 | CENTROMERE PROTEIN W |
OS493_014674-T1 | ZINC FINGERS AND HOMEOBOXES PROTEIN 1, ISOFORM 2 |
OS493_014675-T1 | METALLOPROTEASE |
OS493_014676-T1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
OS493_014677-T1 | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN |
OS493_014678-T1 | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN |
OS493_014679-T1 | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN |
OS493_014680-T1 | ZINC FINGER CCCH-TYPE WITH G PATCH DOMAIN-CONTAINING PROTEIN |
OS493_014681-T1 | |
OS493_014682-T1 | NETRIN/LAMININ-RELATED |
OS493_014683-T1 | NETRIN/LAMININ-RELATED |
OS493_014684-T1 | NETRIN/LAMININ-RELATED |
OS493_014685-T1 | NUCLEAR PROTEIN E3-3 |
OS493_014686-T1 | |
OS493_014687-T1 | NETRIN/LAMININ-RELATED |
OS493_014688-T1 |