About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_014689-T1NETRIN/LAMININ-RELATED
OS493_014690-T1RAP GTPASE-ACTIVATING PROTEIN
OS493_014691-T1POLYCOMB GROUP PROTEIN
OS493_014692-T1
OS493_014693-T1ARYLSULFATASE
OS493_014694-T1
OS493_014695-T1ARYLSULFATASE
OS493_014696-T1ARYLSULFATASE
OS493_014697-T1PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED
OS493_014698-T1ARYLSULFATASE
OS493_014699-T1TRANSCRIPTION INITIATION FACTOR TFIID
OS493_014700-T1WD REPEAT-CONTAINING PROTEIN 48
OS493_014701-T1CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44)
OS493_014702-T1CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44)
OS493_014703-T1CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44)
OS493_014704-T1KIF1-BINDING PROTEIN
OS493_014705-T1KIF1-BINDING PROTEIN
OS493_014706-T1L-THREONINE 3-DEHYDROGENASE
OS493_014707-T1BONUS, ISOFORM C-RELATED
OS493_014708-T1
OS493_014709-T1
OS493_014710-T1UNCHARACTERIZED PROTEIN YECE
OS493_014711-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_014712-T1
OS493_014713-T1SUCCINATE/FUMARATE MITOCHONDRIAL TRANSPORTER-RELATED
OS493_014714-T1SUCCINATE/FUMARATE MITOCHONDRIAL TRANSPORTER-RELATED
OS493_014715-T1
OS493_014716-T1
OS493_014717-T1
OS493_014718-T1ACYL COENZYME A THIOESTER HYDROLASE
OS493_014719-T1FAM124 DOMAIN-CONTAINING PROTEIN-RELATED
OS493_014720-T1
OS493_014721-T1ATP-DEPENDENT RNA AND DNA HELICASE
OS493_014722-T1
OS493_014723-T1ATP-DEPENDENT RNA AND DNA HELICASE
OS493_014724-T1ATP-DEPENDENT RNA AND DNA HELICASE
OS493_014726-T1KEREN-RELATED
OS493_014729-T1
OS493_014730-T1EG:EG0003.4 PROTEIN-RELATED
OS493_014731-T1EG:EG0003.4 PROTEIN-RELATED
OS493_014732-T1EG:EG0003.4 PROTEIN-RELATED
OS493_014733-T1
OS493_014734-T1EG:EG0003.4 PROTEIN-RELATED
OS493_014735-T1HOMOSERINE O-ACETYLTRANSFERASE
OS493_014736-T1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10
OS493_014737-T1NEGATIVE ELONGATION FACTOR COMPLEX MEMBER B
OS493_014738-T1NEGATIVE ELONGATION FACTOR COMPLEX MEMBER B
OS493_014739-T1PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER
OS493_014740-T1TRANSMEMBRANE CHANNEL-RELATED
OS493_014741-T1HIGH-AFFINITY CHOLINE TRANSPORTER 1
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