About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_014427-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_014428-T1INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
OS493_014429-T1OS05G0521000 PROTEIN
OS493_014430-T1
OS493_014431-T1OTU DOMAIN CONTAINING PROTEIN
OS493_014432-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_014433-T1PORCUPINE
OS493_014434-T1ISOAMYL ACETATE-HYDROLYZING ESTERASE 1
OS493_014435-T1ISOAMYL ACETATE-HYDROLYZING ESTERASE 1
OS493_014436-T1ISOAMYL ACETATE-HYDROLYZING ESTERASE 1
OS493_014437-T1NYD-SP28 PROTEIN
OS493_014438-T1ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN
OS493_014439-T1
OS493_014440-T1DISKS LARGE HOMOLOG 5
OS493_014441-T1DISKS LARGE HOMOLOG 5
OS493_014442-T1
OS493_014443-T1ANKYRIN REPEAT-CONTAINING
OS493_014444-T1ROLLING PEBBLES, ISOFORM B
OS493_014445-T1RNA-BINDING PROTEIN RELATED
OS493_014446-T1E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER
OS493_014447-T1RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
OS493_014448-T1
OS493_014449-T160S RIBOSOMAL PROTEIN L19
OS493_014450-T1MRNA TURNOVER PROTEIN 4 MRTO4
OS493_014451-T1CENTROSOMAL PROTEIN 2
OS493_014452-T1
OS493_014453-T1
OS493_014454-T1
OS493_014455-T1
OS493_014456-T1CENTROSOMAL PROTEIN 2
OS493_014457-T1
OS493_014458-T1CENTROSOMAL PROTEIN 2
OS493_014459-T1CENTROSOMAL PROTEIN CEP135
OS493_014460-T1CENTROSOMAL PROTEIN 2
OS493_014461-T1
OS493_014462-T1
OS493_014463-T1-
OS493_014464-T1RIBOPHORIN II
OS493_014465-T1
OS493_014466-T1FIBROBLAST GROWTH FACTOR
OS493_014467-T1VIRAL IAP-ASSOCIATED FACTOR HOMOLOG
OS493_014468-T1MICROSOMAL GLUTATHIONE S-TRANSFERASE 1
OS493_014469-T140S RIBOSOMAL PROTEIN S8
OS493_014470-T1
OS493_014471-T1TUDOR DOMAIN CONTAINING PROTEIN
OS493_014472-T1TUDOR DOMAIN CONTAINING PROTEIN
OS493_014473-T1RING FINGER PROTEIN 17
OS493_014474-T1LATE EMBRYOGENESIS ABUNDANT PLANTS LEA-RELATED
OS493_014475-T1
OS493_014477-T1ALPHA- 1,6 -FUCOSYLTRANSFERASE
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