Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_014427-T1 | TNF RECEPTOR ASSOCIATED FACTOR |
OS493_014428-T1 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN |
OS493_014429-T1 | OS05G0521000 PROTEIN |
OS493_014430-T1 | |
OS493_014431-T1 | OTU DOMAIN CONTAINING PROTEIN |
OS493_014432-T1 | TNF RECEPTOR ASSOCIATED FACTOR |
OS493_014433-T1 | PORCUPINE |
OS493_014434-T1 | ISOAMYL ACETATE-HYDROLYZING ESTERASE 1 |
OS493_014435-T1 | ISOAMYL ACETATE-HYDROLYZING ESTERASE 1 |
OS493_014436-T1 | ISOAMYL ACETATE-HYDROLYZING ESTERASE 1 |
OS493_014437-T1 | NYD-SP28 PROTEIN |
OS493_014438-T1 | ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN |
OS493_014439-T1 | |
OS493_014440-T1 | DISKS LARGE HOMOLOG 5 |
OS493_014441-T1 | DISKS LARGE HOMOLOG 5 |
OS493_014442-T1 | |
OS493_014443-T1 | ANKYRIN REPEAT-CONTAINING |
OS493_014444-T1 | ROLLING PEBBLES, ISOFORM B |
OS493_014445-T1 | RNA-BINDING PROTEIN RELATED |
OS493_014446-T1 | E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER |
OS493_014447-T1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
OS493_014448-T1 | |
OS493_014449-T1 | 60S RIBOSOMAL PROTEIN L19 |
OS493_014450-T1 | MRNA TURNOVER PROTEIN 4 MRTO4 |
OS493_014451-T1 | CENTROSOMAL PROTEIN 2 |
OS493_014452-T1 | |
OS493_014453-T1 | |
OS493_014454-T1 | |
OS493_014455-T1 | |
OS493_014456-T1 | CENTROSOMAL PROTEIN 2 |
OS493_014457-T1 | |
OS493_014458-T1 | CENTROSOMAL PROTEIN 2 |
OS493_014459-T1 | CENTROSOMAL PROTEIN CEP135 |
OS493_014460-T1 | CENTROSOMAL PROTEIN 2 |
OS493_014461-T1 | |
OS493_014462-T1 | |
OS493_014463-T1 | - |
OS493_014464-T1 | RIBOPHORIN II |
OS493_014465-T1 | |
OS493_014466-T1 | FIBROBLAST GROWTH FACTOR |
OS493_014467-T1 | VIRAL IAP-ASSOCIATED FACTOR HOMOLOG |
OS493_014468-T1 | MICROSOMAL GLUTATHIONE S-TRANSFERASE 1 |
OS493_014469-T1 | 40S RIBOSOMAL PROTEIN S8 |
OS493_014470-T1 | |
OS493_014471-T1 | TUDOR DOMAIN CONTAINING PROTEIN |
OS493_014472-T1 | TUDOR DOMAIN CONTAINING PROTEIN |
OS493_014473-T1 | RING FINGER PROTEIN 17 |
OS493_014474-T1 | LATE EMBRYOGENESIS ABUNDANT PLANTS LEA-RELATED |
OS493_014475-T1 | |
OS493_014477-T1 | ALPHA- 1,6 -FUCOSYLTRANSFERASE |