Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_014902-T1 | MACROGLOBULIN / COMPLEMENT |
OS493_014903-T1 | MACROGLOBULIN / COMPLEMENT |
OS493_014904-T1 | ARGININOSUCCINATE SYNTHASE |
OS493_014905-T1 | BLOC-1-RELATED COMPLEX SUBUNIT 7 BORSC7 |
OS493_014906-T1 | CALCIUM BINDING PROTEINS |
OS493_014907-T1 | CALCIUM BINDING PROTEINS |
OS493_014908-T1 | UNCHARACTERIZED |
OS493_014909-T1 | |
OS493_014910-T1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 13B |
OS493_014911-T1 | |
OS493_014912-T1 | |
OS493_014913-T1 | |
OS493_014914-T1 | |
OS493_014915-T1 | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
OS493_014916-T1 | |
OS493_014917-T1 | N-ALPHA-ACETYLTRANSFERASE 20 |
OS493_014918-T1 | ACTIN |
OS493_014919-T1 | BROMO ADJACENT HOMOLOGY DOMAIN-CONTAINING 1 PROTEIN |
OS493_014920-T1 | ARRESTIN DOMAIN-CONTAINING PROTEIN D |
OS493_014921-T1 | CHONDROITIN SYNTHASE |
OS493_014922-T1 | |
OS493_014925-T1 | ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1 |
OS493_014927-T1 | ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1 |
OS493_014929-T1 | |
OS493_014930-T1 | |
OS493_014931-T1 | ARMADILLO REPEAT-CONTAINING PROTEIN 8 |
OS493_014932-T1 | ARMADILLO REPEAT-CONTAINING PROTEIN 8 |
OS493_014933-T1 | SYNAPTIC ADHESION-LIKE MOLECULE SALM |
OS493_014934-T1 | OXIDASE/PEROXIDASE |
OS493_014935-T1 | OXIDASE/PEROXIDASE |
OS493_014936-T1 | CARTILAGE ACIDIC PROTEIN 1 |
OS493_014937-T1 | |
OS493_014938-T1 | |
OS493_014939-T1 | UPF0315 PROTEIN-RELATED |
OS493_014940-T1 | ARMADILLO REPEAT-CONTAINING PROTEIN 8 |
OS493_014941-T1 | ARMADILLO REPEAT-CONTAINING PROTEIN 8 |
OS493_014945-T1 | |
OS493_014946-T1 | |
OS493_014947-T1 | |
OS493_014948-T1 | |
OS493_014949-T1 | |
OS493_014950-T1 | ARMADILLO REPEAT-CONTAINING PROTEIN 8 |
OS493_014951-T1 | TOLL-LIKE RECEPTOR |
OS493_014952-T1 | ARMADILLO REPEAT-CONTAINING PROTEIN 8 |
OS493_014953-T1 | |
OS493_014954-T1 | |
OS493_014955-T1 | |
OS493_014956-T1 | |
OS493_014958-T1 | |
OS493_014959-T1 |