Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_015075-T1 | REACTIVE OXYGEN SPECIES MODULATOR 1 |
OS493_015076-T1 | MRNA-CAPPING ENZYME |
OS493_015077-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_015078-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_015079-T1 | NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED |
OS493_015080-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 189 |
OS493_015082-T1 | OS05G0521000 PROTEIN |
OS493_015083-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
OS493_015084-T1 | WD REPEAT-CONTAINING PROTEIN 11 |
OS493_015085-T1 | FIBRONECTIN TYPE 3 AND ANKYRIN REPEAT DOMAINS PROTEIN 1 |
OS493_015086-T1 | MITOFERRIN-1-RELATED |
OS493_015087-T1 | SUPPRESSOR OF FUSED |
OS493_015088-T1 | BIORIENTATION OF CHROMOSOMES IN CELL DIVISION 1 FAMILY MEMBER |
OS493_015089-T1 | - |
OS493_015090-T1 | UNCHARACTERIZED |
OS493_015091-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_015092-T1 | FIBRINOGEN ALPHA CHAIN |
OS493_015093-T1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
OS493_015094-T1 | UNCHARACTERIZED |
OS493_015095-T1 | SOX TRANSCRIPTION FACTOR |
OS493_015096-T1 | MAJOR VAULT PROTEIN |
OS493_015097-T1 | CYCLINS |
OS493_015098-T1 | DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED |
OS493_015099-T1 | DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED |
OS493_015100-T1 | |
OS493_015101-T1 | |
OS493_015102-T1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
OS493_015103-T1 | - |
OS493_015104-T1 | RCG26366 |
OS493_015105-T1 | ALPHA- 1,3 -FUCOSYLTRANSFERASE |
OS493_015106-T1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
OS493_015107-T1 | ATP SYNTHASE E CHAIN, MITOCHONDRIAL |
OS493_015108-T1 | SYNAPTOBREVIN HOMOLOG YKT6 |
OS493_015109-T1 | |
OS493_015110-T1 | |
OS493_015111-T1 | |
OS493_015112-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_015113-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_015114-T1 | TYPE I INOSITOL-1,4,5-TRISPHOSPHATE 5-PHOSPHATASE |
OS493_015115-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 |
OS493_015116-T1 | ENOLASE (DUF1399) |
OS493_015117-T1 | ENOLASE (DUF1399) |
OS493_015120-T1 | OPSIN |
OS493_015121-T1 | |
OS493_015123-T1 | |
OS493_015124-T1 | |
OS493_015127-T1 | FIBRILLIN-RELATED |
OS493_015129-T1 | PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1 |
OS493_015130-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_015131-T1 |