About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_014960-T1C-TYPE LECTIN SUPERFAMILY MEMBER
OS493_014962-T1
OS493_014963-T1
OS493_014964-T1C-TYPE LECTIN SUPERFAMILY MEMBER
OS493_014965-T1
OS493_014966-T1
OS493_014967-T1
OS493_014968-T1TOLL-LIKE RECEPTOR
OS493_014969-T1
OS493_014970-T1TOLL-LIKE RECEPTOR
OS493_014971-T1
OS493_014972-T1
OS493_014973-T1MYOSIN HEAVY CHAIN, NON-MUSCLE
OS493_014975-T1
OS493_014976-T1
OS493_014977-T1
OS493_014978-T1
OS493_014979-T1
OS493_014980-T1
OS493_014981-T1OXIDASE/PEROXIDASE
OS493_014982-T1FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE
OS493_014983-T1BTG3-ASSOCIATED NUCLEAR PROTEIN BANP
OS493_014984-T1
OS493_014985-T1SOLUTE CARRIER FAMILY 52
OS493_014986-T1DNAJ HOMOLOG SUBFAMILY B MEMBER 11
OS493_014991-T1RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT
OS493_014992-T1RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT
OS493_014993-T1
OS493_014994-T1NEURALIZED
OS493_014996-T1SPERMATOGENESIS-ASSOCIATED SERINE-RICH PROTEIN 2-RELATED
OS493_014997-T1ACYL-MALONYL CONDENSING ENZYME-RELATED
OS493_014999-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_015000-T1ZETA-COAT PROTEIN
OS493_015002-T1
OS493_015003-T1
OS493_015004-T1CYCLIN Y, ISOFORM A
OS493_015005-T1UNCHARACTERIZED
OS493_015006-T1UNCHARACTERIZED
OS493_015007-T1PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1/ALPHA-1,3-MANNOSYL-GLYCOPROTEIN 2-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE
OS493_015008-T1HYDROXYSTEROID (11-BETA) DEHYDROGENASE 1-LIKE B-RELATED
OS493_015009-T1HYDROXYSTEROID (11-BETA) DEHYDROGENASE 1-LIKE B-RELATED
OS493_015010-T1
OS493_015011-T1ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
OS493_015012-T1ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
OS493_015013-T1NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58
OS493_015014-T1NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58
OS493_015015-T1GPALPP MOTIFS-CONTAINING PROTEIN 1
OS493_015016-T1-
OS493_015018-T1MYOSIN HEAVY CHAIN, NON-MUSCLE
OS493_015019-T1
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