About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_015306-T1GLUTAREDOXIN DOMAIN-CONTAINING CYSTEINE-RICH PROTEIN CG12206-RELATED
OS493_015307-T1OS06G0237300 PROTEIN
OS493_015308-T1
OS493_015309-T1L1 TRANSPOSABLE ELEMENT-RELATED
OS493_015310-T1TRANSCRIPTION INITIATION FACTOR TFIID 55 KD SUBUNIT-RELATED
OS493_015311-T1UNCHARACTERIZED
OS493_015312-T1
OS493_015313-T1
OS493_015314-T1
OS493_015315-T1
OS493_015316-T1TRANSCRIPTION COFACTOR VESTIGIAL-LIKE PROTEIN 4
OS493_015317-T1UBIQUITIN-ACTIVATING ENZYME E1
OS493_015318-T1SOLEUCYL-TRNA SYNTHETASE
OS493_015319-T1NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-B SUBUNIT
OS493_015320-T1
OS493_015321-T1WD40 REPEAT DOMAIN 95
OS493_015322-T1-
OS493_015323-T1UNCHARACTERIZED
OS493_015324-T1E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED
OS493_015325-T1
OS493_015326-T1UNCHARACTERIZED
OS493_015328-T1
OS493_015329-T1
OS493_015330-T1HUEL-CATION TRANSPORTER
OS493_015331-T1V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT
OS493_015332-T1TRANSLATION INITIATION FACTOR IF-3
OS493_015333-T1TGF-BETA FAMILY
OS493_015334-T1
OS493_015335-T1
OS493_015336-T1
OS493_015340-T1NUCLEOPORIN P54
OS493_015341-T1
OS493_015342-T1
OS493_015343-T1
OS493_015344-T1
OS493_015345-T1ARFAPTIN-RELATED
OS493_015346-T1UBIQUITIN-PROTEIN LIGASE E3C
OS493_015347-T1EXPRESSED PROTEIN
OS493_015348-T1LAR INTERACTING PROTEIN LIP -RELATED PROTEIN
OS493_015350-T1
OS493_015351-T1LAR INTERACTING PROTEIN LIP -RELATED PROTEIN
OS493_015352-T1
OS493_015353-T1
OS493_015354-T1UNCHARACTERIZED
OS493_015355-T1
OS493_015356-T1
OS493_015358-T1RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1
OS493_015359-T1
OS493_015360-T1
OS493_015361-T1
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