Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_015306-T1 | GLUTAREDOXIN DOMAIN-CONTAINING CYSTEINE-RICH PROTEIN CG12206-RELATED |
OS493_015307-T1 | OS06G0237300 PROTEIN |
OS493_015308-T1 | |
OS493_015309-T1 | L1 TRANSPOSABLE ELEMENT-RELATED |
OS493_015310-T1 | TRANSCRIPTION INITIATION FACTOR TFIID 55 KD SUBUNIT-RELATED |
OS493_015311-T1 | UNCHARACTERIZED |
OS493_015312-T1 | |
OS493_015313-T1 | |
OS493_015314-T1 | |
OS493_015315-T1 | |
OS493_015316-T1 | TRANSCRIPTION COFACTOR VESTIGIAL-LIKE PROTEIN 4 |
OS493_015317-T1 | UBIQUITIN-ACTIVATING ENZYME E1 |
OS493_015318-T1 | SOLEUCYL-TRNA SYNTHETASE |
OS493_015319-T1 | NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-B SUBUNIT |
OS493_015320-T1 | |
OS493_015321-T1 | WD40 REPEAT DOMAIN 95 |
OS493_015322-T1 | - |
OS493_015323-T1 | UNCHARACTERIZED |
OS493_015324-T1 | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED |
OS493_015325-T1 | |
OS493_015326-T1 | UNCHARACTERIZED |
OS493_015328-T1 | |
OS493_015329-T1 | |
OS493_015330-T1 | HUEL-CATION TRANSPORTER |
OS493_015331-T1 | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT |
OS493_015332-T1 | TRANSLATION INITIATION FACTOR IF-3 |
OS493_015333-T1 | TGF-BETA FAMILY |
OS493_015334-T1 | |
OS493_015335-T1 | |
OS493_015336-T1 | |
OS493_015340-T1 | NUCLEOPORIN P54 |
OS493_015341-T1 | |
OS493_015342-T1 | |
OS493_015343-T1 | |
OS493_015344-T1 | |
OS493_015345-T1 | ARFAPTIN-RELATED |
OS493_015346-T1 | UBIQUITIN-PROTEIN LIGASE E3C |
OS493_015347-T1 | EXPRESSED PROTEIN |
OS493_015348-T1 | LAR INTERACTING PROTEIN LIP -RELATED PROTEIN |
OS493_015350-T1 | |
OS493_015351-T1 | LAR INTERACTING PROTEIN LIP -RELATED PROTEIN |
OS493_015352-T1 | |
OS493_015353-T1 | |
OS493_015354-T1 | UNCHARACTERIZED |
OS493_015355-T1 | |
OS493_015356-T1 | |
OS493_015358-T1 | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 |
OS493_015359-T1 | |
OS493_015360-T1 | |
OS493_015361-T1 |