Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_015362-T1 | DEDICATOR OF CYTOKINESIS DOCK |
OS493_015363-T1 | DEDICATOR OF CYTOKINESIS DOCK |
OS493_015364-T1 | DEDICATOR OF CYTOKINESIS DOCK |
OS493_015365-T1 | DEDICATOR OF CYTOKINESIS DOCK |
OS493_015367-T1 | |
OS493_015368-T1 | YTH YT521-B HOMOLOGY DOMAIN-CONTAINING |
OS493_015369-T1 | FUKUTIN RELATED PROTEIN |
OS493_015370-T1 | TETRASPANIN |
OS493_015371-T1 | MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED |
OS493_015372-T1 | RGS-GAIP INTERACTING PROTEIN GIPC |
OS493_015373-T1 | DNA-DIRECTED RNA POLYMERASE |
OS493_015374-T1 | DNA-DIRECTED RNA POLYMERASE |
OS493_015375-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_015376-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_015377-T1 | G-PROTEIN COUPLED RECEPTOR 143 |
OS493_015378-T1 | - |
OS493_015379-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_015380-T1 | METHYLTRANSFERASE |
OS493_015381-T1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
OS493_015382-T1 | |
OS493_015383-T1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
OS493_015384-T1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
OS493_015386-T1 | ALDO/KETO REDUCTASE |
OS493_015387-T1 | |
OS493_015388-T1 | OPSIN |
OS493_015389-T1 | OPSIN |
OS493_015390-T1 | NADH-CYTOCHROME B5 REDUCTASE |
OS493_015391-T1 | |
OS493_015392-T1 | CONTACTIN 5 |
OS493_015393-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_015394-T1 | CELL DIVISION CONTROL PROTEIN 6-RELATED |
OS493_015397-T1 | CALCYPHOSIN |
OS493_015398-T1 | CALCYPHOSIN |
OS493_015400-T1 | C. ELEGANS HOMEOBOX |
OS493_015401-T1 | AGAP005574-PA |
OS493_015403-T1 | |
OS493_015405-T1 | EXPRESSED PROTEIN |
OS493_015406-T1 | EPOXIDE HYDROLASE |
OS493_015407-T1 | TFIIF-ALPHA |
OS493_015408-T1 | TFIIF-ALPHA |
OS493_015410-T1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
OS493_015412-T1 | |
OS493_015413-T1 | |
OS493_015414-T1 | |
OS493_015415-T1 | - |
OS493_015416-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_015417-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_015418-T1 | |
OS493_015419-T1 | 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE |
OS493_015421-T1 |