Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_015536-T1 | RE40534P-RELATED |
OS493_015537-T1 | RE40534P-RELATED |
OS493_015538-T1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR MSS4 |
OS493_015539-T1 | RHOPHILIN |
OS493_015540-T1 | PROTEIN C20ORF24 RAB5-INTERACTING PROTEIN |
OS493_015541-T1 | 60S RIBOSOMAL PROTEIN L13 |
OS493_015542-T1 | PROTEIN DISULFIDE-ISOMERASE TMX3 |
OS493_015543-T1 | - |
OS493_015544-T1 | - |
OS493_015545-T1 | E3 UBIQUITIN-PROTEIN LIGASE ZNRF1-LIKE PROTEIN |
OS493_015546-T1 | |
OS493_015547-T1 | NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN |
OS493_015548-T1 | NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN |
OS493_015549-T1 | |
OS493_015550-T1 | |
OS493_015551-T1 | |
OS493_015552-T1 | GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER |
OS493_015553-T1 | GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER |
OS493_015554-T1 | |
OS493_015555-T1 | |
OS493_015556-T1 | |
OS493_015557-T1 | FORMIN HOMOLOGY 2 DOMAIN CONTAINING, ISOFORM I |
OS493_015558-T1 | |
OS493_015559-T1 | VACUOLAR SORTING PROTEIN 35 |
OS493_015560-T1 | VACUOLAR SORTING PROTEIN 35 |
OS493_015561-T1 | |
OS493_015562-T1 | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL |
OS493_015563-T1 | ANILLIN/RHOTEKIN RTKN |
OS493_015564-T1 | T-CELL ACTIVATION INHIBITOR, MITOCHONDRIAL |
OS493_015565-T1 | BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA |
OS493_015566-T1 | SI:CH211-161H7.5-RELATED |
OS493_015567-T1 | MYOSIN LIGHT CHAIN 1, 3 |
OS493_015568-T1 | MYOSIN LIGHT CHAIN 1, 3 |
OS493_015569-T1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
OS493_015570-T1 | |
OS493_015571-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 102A |
OS493_015572-T1 | ASPARAGINASE |
OS493_015573-T1 | F-BOX ONLY PROTEIN 3 |
OS493_015574-T1 | - |
OS493_015575-T1 | DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL-RELATED |
OS493_015576-T1 | WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER |
OS493_015577-T1 | SYS1 |
OS493_015578-T1 | MYOTROPHIN |
OS493_015579-T1 | 5'-NUCLEOTIDASE-RELATED |
OS493_015580-T1 | |
OS493_015581-T1 | |
OS493_015582-T1 | |
OS493_015583-T1 | |
OS493_015584-T1 | |
OS493_015585-T1 |