About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

<< First 283 284 285 286 287 288 289 290 291 292 Forward> Last>>        750 pages in total

Gene IDDescription
OS493_015536-T1RE40534P-RELATED
OS493_015537-T1RE40534P-RELATED
OS493_015538-T1GUANINE NUCLEOTIDE EXCHANGE FACTOR MSS4
OS493_015539-T1RHOPHILIN
OS493_015540-T1PROTEIN C20ORF24 RAB5-INTERACTING PROTEIN
OS493_015541-T160S RIBOSOMAL PROTEIN L13
OS493_015542-T1PROTEIN DISULFIDE-ISOMERASE TMX3
OS493_015543-T1-
OS493_015544-T1-
OS493_015545-T1E3 UBIQUITIN-PROTEIN LIGASE ZNRF1-LIKE PROTEIN
OS493_015546-T1
OS493_015547-T1NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN
OS493_015548-T1NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN
OS493_015549-T1
OS493_015550-T1
OS493_015551-T1
OS493_015552-T1GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER
OS493_015553-T1GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER
OS493_015554-T1
OS493_015555-T1
OS493_015556-T1
OS493_015557-T1FORMIN HOMOLOGY 2 DOMAIN CONTAINING, ISOFORM I
OS493_015558-T1
OS493_015559-T1VACUOLAR SORTING PROTEIN 35
OS493_015560-T1VACUOLAR SORTING PROTEIN 35
OS493_015561-T1
OS493_015562-T1ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL
OS493_015563-T1ANILLIN/RHOTEKIN RTKN
OS493_015564-T1T-CELL ACTIVATION INHIBITOR, MITOCHONDRIAL
OS493_015565-T1BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA
OS493_015566-T1SI:CH211-161H7.5-RELATED
OS493_015567-T1MYOSIN LIGHT CHAIN 1, 3
OS493_015568-T1MYOSIN LIGHT CHAIN 1, 3
OS493_015569-T1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
OS493_015570-T1
OS493_015571-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 102A
OS493_015572-T1ASPARAGINASE
OS493_015573-T1F-BOX ONLY PROTEIN 3
OS493_015574-T1-
OS493_015575-T1DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL-RELATED
OS493_015576-T1WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER
OS493_015577-T1SYS1
OS493_015578-T1MYOTROPHIN
OS493_015579-T15'-NUCLEOTIDASE-RELATED
OS493_015580-T1
OS493_015581-T1
OS493_015582-T1
OS493_015583-T1
OS493_015584-T1
OS493_015585-T1
TOP