Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_015639-T1 | |
OS493_015640-T1 | POLYCYSTIN-1 |
OS493_015641-T1 | POLYCYSTIN-1 |
OS493_015642-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_015643-T1 | PROTEIN PHOSPHATASE 2C |
OS493_015644-T1 | SERINE/THREONINE-PROTEIN KINASE |
OS493_015645-T1 | SERINE/THREONINE-PROTEIN KINASE |
OS493_015646-T1 | ADENINE PHOSPHORIBOSYLTRANSFERASE |
OS493_015647-T1 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE |
OS493_015648-T1 | METALLOPROTEASE TLDD |
OS493_015649-T1 | |
OS493_015650-T1 | 50S RIBOSOMAL PROTEIN L3 |
OS493_015651-T1 | RAPSYN-RELATED |
OS493_015652-T1 | RAPSYN-RELATED |
OS493_015653-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR |
OS493_015654-T1 | PROTEIN CBG05349 |
OS493_015655-T1 | PROTEIN CBG05349 |
OS493_015656-T1 | PHOSPHOLIPID ACYLTRANSFERASE |
OS493_015657-T1 | PHOSPHOLIPID ACYLTRANSFERASE |
OS493_015658-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
OS493_015659-T1 | GH28348P |
OS493_015660-T1 | |
OS493_015661-T1 | DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1 |
OS493_015662-T1 | DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1 |
OS493_015663-T1 | DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1 |
OS493_015664-T1 | DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1 |
OS493_015665-T1 | DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1 |
OS493_015666-T1 | DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1 |
OS493_015667-T1 | DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1 |
OS493_015668-T1 | DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1 |
OS493_015669-T1 | DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1 |
OS493_015670-T1 | |
OS493_015671-T1 | DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1 |
OS493_015672-T1 | |
OS493_015676-T1 | COLLAGEN |
OS493_015678-T1 | |
OS493_015679-T1 | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS |
OS493_015680-T1 | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS |
OS493_015681-T1 | PROTEIN CBG12054-RELATED |
OS493_015682-T1 | UNCHARACTERIZED |
OS493_015683-T1 | |
OS493_015684-T1 | ALPHA- 1,6 -FUCOSYLTRANSFERASE |
OS493_015685-T1 | |
OS493_015686-T1 | RE42071P |
OS493_015687-T1 | GLUCOSE-6-PHOSPHATE ISOMERASE |
OS493_015688-T1 | |
OS493_015689-T1 | |
OS493_015690-T1 | |
OS493_015691-T1 | |
OS493_015692-T1 |