About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_015693-T1
OS493_015694-T1
OS493_015695-T1
OS493_015696-T1
OS493_015697-T1
OS493_015698-T1ENOYL-COA HYDRATASE-RELATED
OS493_015699-T1UNCHARACTERIZED
OS493_015700-T1SOLUTE CARRIER FAMILY 10 MEMBER 7
OS493_015701-T1GLYCEROL-3-PHOSPHATE DEHYDROGENASE
OS493_015702-T1SOLUTE CARRIER FAMILY 10 MEMBER 7
OS493_015703-T1GLYCEROL-3-PHOSPHATE DEHYDROGENASE
OS493_015704-T1
OS493_015705-T1SOLUTE CARRIER FAMILY 10 MEMBER 7
OS493_015706-T1UNCHARACTERIZED
OS493_015707-T1
OS493_015708-T1OXA1
OS493_015709-T1KINESIN-LIKE PROTEIN KLP-3
OS493_015710-T1
OS493_015711-T1FIBRONECTIN TYPE 3 AND ANKYRIN REPEAT DOMAINS PROTEIN 1
OS493_015712-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12
OS493_015713-T1MYOTROPHIN
OS493_015714-T1
OS493_015715-T1
OS493_015716-T1PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED
OS493_015717-T1PACHYTENE CHECKPOINT PROTEIN 2
OS493_015718-T1CENTROSOMAL PROTEIN OF 76 KDA
OS493_015719-T1G PROTEIN-COUPLED RECEPTOR
OS493_015720-T1LD33804P
OS493_015721-T1RING-TYPE DOMAIN-CONTAINING PROTEIN
OS493_015722-T1PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED
OS493_015723-T1TRANSMEMBRANE PROTEIN 229 FAMILY MEMBER
OS493_015724-T1DUF445 DOMAIN-CONTAINING PROTEIN-RELATED
OS493_015725-T1IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX
OS493_015726-T1ADAPTIN, ALPHA/GAMMA/EPSILON
OS493_015727-T1UNCHARACTERIZED
OS493_015728-T1STAR-RELATED LIPID TRANSFER PROTEIN 9
OS493_015729-T1TRANSCRIPTION FACTOR E2F
OS493_015730-T1
OS493_015731-T1SERINE/THREONINE-PROTEIN KINASE
OS493_015733-T1UNCHARACTERIZED
OS493_015734-T1
OS493_015735-T1MIP08469P
OS493_015736-T1MIP08469P
OS493_015737-T1ANKYRIN REPEAT FAMILY PROTEIN
OS493_015738-T1G-PROTEIN COUPLED RECEPTOR 158-RELATED
OS493_015739-T1
OS493_015740-T1
OS493_015741-T1F-BOX ONLY PROTEIN 15
OS493_015742-T1HEAT SHOCK FACTOR BINDING PROTEIN 1
OS493_015743-T1STEROL O-ACYLTRANSFERASE
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