Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_015859-T1 | |
OS493_015860-T1 | |
OS493_015861-T1 | AMYLOID PROTEIN-BINDING PROTEIN 2 |
OS493_015862-T1 | MEIOTIC NUCLEAR DIVISION PROTEIN 1 HOMOLOG |
OS493_015863-T1 | MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE |
OS493_015864-T1 | |
OS493_015865-T1 | N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED |
OS493_015866-T1 | EF-HAND DOMAIN-CONTAINING PROTEIN D |
OS493_015867-T1 | IRON-SULFUR CLUSTER CO-CHAPERONE PROTEIN HSCB |
OS493_015868-T1 | ACYL-COA DEHYDROGENASE |
OS493_015869-T1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED |
OS493_015870-T1 | TUMOR SUPPRESSING SUBTRANSFERABLE CANDIDATE 4 TSSC4 |
OS493_015871-T1 | DRAB5-RELATED |
OS493_015872-T1 | THIOSULFATE SULFERTANSFERASE |
OS493_015873-T1 | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN |
OS493_015874-T1 | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN |
OS493_015875-T1 | DYNEIN LIGHT CHAIN |
OS493_015876-T1 | METHYLTRANSFERASE |
OS493_015877-T1 | ANKYRIN REPEAT FAMILY PROTEIN |
OS493_015878-T1 | |
OS493_015879-T1 | |
OS493_015880-T1 | SERINE/THREONINE PROTEIN PHOSPHATASE |
OS493_015881-T1 | UNCHARACTERIZED |
OS493_015882-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
OS493_015883-T1 | MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED |
OS493_015884-T1 | SERINE/ARGININE RICH SPLICING FACTOR |
OS493_015885-T1 | |
OS493_015886-T1 | |
OS493_015887-T1 | |
OS493_015888-T1 | 2-5 OLIGOADENYLATE SYNTHETASE |
OS493_015889-T1 | CYTOCHROME P450 FAMILY 3 |
OS493_015890-T1 | CYTOCHROME P450 FAMILY 3 |
OS493_015891-T1 | AMYLOID PROTEIN-BINDING PROTEIN 2 |
OS493_015893-T1 | APOPTOSIS-INDUCING FACTOR 1 |
OS493_015894-T1 | GPI TRANSAMIDASE COMPONENT PIG-S |
OS493_015895-T1 | METALLOPHOSPHOESTERASE |
OS493_015896-T1 | PHOSPHATIDYLINOSITOL SYNTHASE |
OS493_015897-T1 | |
OS493_015898-T1 | |
OS493_015899-T1 | |
OS493_015900-T1 | PROTEIN DISPATCHED-RELATED |
OS493_015901-T1 | METALLOPHOSPHOESTERASE |
OS493_015902-T1 | PROTEIN LIN-7 HOMOLOG |
OS493_015903-T1 | PHOSPHATIDYLSERINE DECARBOXYLASE |
OS493_015904-T1 | |
OS493_015905-T1 | 39A RIBOSOMAL PROTEIN L50, MITOCHONDRIAL |
OS493_015906-T1 | NUCLEOPORIN NUP84-RELATED |
OS493_015907-T1 | NUCLEOPORIN NUP84-RELATED |
OS493_015908-T1 | TRANSLATIONAL ACTIVATOR GCN1-RELATED |
OS493_015909-T1 | TRANSLATIONAL ACTIVATOR GCN1-RELATED |