About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_015859-T1
OS493_015860-T1
OS493_015861-T1AMYLOID PROTEIN-BINDING PROTEIN 2
OS493_015862-T1MEIOTIC NUCLEAR DIVISION PROTEIN 1 HOMOLOG
OS493_015863-T1MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE
OS493_015864-T1
OS493_015865-T1N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED
OS493_015866-T1EF-HAND DOMAIN-CONTAINING PROTEIN D
OS493_015867-T1IRON-SULFUR CLUSTER CO-CHAPERONE PROTEIN HSCB
OS493_015868-T1ACYL-COA DEHYDROGENASE
OS493_015869-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED
OS493_015870-T1TUMOR SUPPRESSING SUBTRANSFERABLE CANDIDATE 4 TSSC4
OS493_015871-T1DRAB5-RELATED
OS493_015872-T1THIOSULFATE SULFERTANSFERASE
OS493_015873-T1RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
OS493_015874-T1RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
OS493_015875-T1DYNEIN LIGHT CHAIN
OS493_015876-T1METHYLTRANSFERASE
OS493_015877-T1ANKYRIN REPEAT FAMILY PROTEIN
OS493_015878-T1
OS493_015879-T1
OS493_015880-T1SERINE/THREONINE PROTEIN PHOSPHATASE
OS493_015881-T1UNCHARACTERIZED
OS493_015882-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_015883-T1MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED
OS493_015884-T1SERINE/ARGININE RICH SPLICING FACTOR
OS493_015885-T1
OS493_015886-T1
OS493_015887-T1
OS493_015888-T12-5 OLIGOADENYLATE SYNTHETASE
OS493_015889-T1CYTOCHROME P450 FAMILY 3
OS493_015890-T1CYTOCHROME P450 FAMILY 3
OS493_015891-T1AMYLOID PROTEIN-BINDING PROTEIN 2
OS493_015893-T1APOPTOSIS-INDUCING FACTOR 1
OS493_015894-T1GPI TRANSAMIDASE COMPONENT PIG-S
OS493_015895-T1METALLOPHOSPHOESTERASE
OS493_015896-T1PHOSPHATIDYLINOSITOL SYNTHASE
OS493_015897-T1
OS493_015898-T1
OS493_015899-T1
OS493_015900-T1PROTEIN DISPATCHED-RELATED
OS493_015901-T1METALLOPHOSPHOESTERASE
OS493_015902-T1PROTEIN LIN-7 HOMOLOG
OS493_015903-T1PHOSPHATIDYLSERINE DECARBOXYLASE
OS493_015904-T1
OS493_015905-T139A RIBOSOMAL PROTEIN L50, MITOCHONDRIAL
OS493_015906-T1NUCLEOPORIN NUP84-RELATED
OS493_015907-T1NUCLEOPORIN NUP84-RELATED
OS493_015908-T1TRANSLATIONAL ACTIVATOR GCN1-RELATED
OS493_015909-T1TRANSLATIONAL ACTIVATOR GCN1-RELATED
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