About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_015910-T1E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED
OS493_015911-T1TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2
OS493_015912-T1SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED
OS493_015913-T1FLOTILLIN-RELATED
OS493_015914-T1FLOTILLIN-RELATED
OS493_015915-T1SEC14 RELATED PROTEIN
OS493_015916-T1SNF2/RAD54 FAMILY MEMBER
OS493_015917-T1-
OS493_015918-T1CENTROMERE PROTEIN V
OS493_015919-T1CENTROMERE PROTEIN V
OS493_015920-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_015921-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_015922-T1
OS493_015923-T1
OS493_015924-T1BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR
OS493_015925-T1BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR
OS493_015926-T1BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR
OS493_015927-T1TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
OS493_015928-T1TGF-BETA FAMILY
OS493_015929-T1NGG1 INTERACTING FACTOR 3
OS493_015930-T1RUS1 FAMILY PROTEIN C16ORF58
OS493_015931-T1RUS1 FAMILY PROTEIN C16ORF58
OS493_015932-T1
OS493_015933-T1CARBOHYDRATE BINDING DOMAIN CONTAINING PROTEIN
OS493_015934-T1OPSIN
OS493_015935-T1G PROTEIN-COUPLED RECEPTOR
OS493_015936-T1OPSIN
OS493_015937-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
OS493_015938-T1MICRORNA PROCESSOR COMPLEX SUBUNIT DGCR8
OS493_015939-T1TRANSDUCIN BETA-LIKE 3
OS493_015940-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_015941-T1UNCHARACTERIZED
OS493_015942-T1CELL FATE DETERMINING PROTEIN MAB21-RELATED
OS493_015943-T1TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
OS493_015944-T1
OS493_015945-T1
OS493_015946-T1
OS493_015947-T1PROTEIN ABHD11
OS493_015948-T1RAS-RELATED PROTEIN RAB
OS493_015949-T1PROPERDIN
OS493_015950-T1
OS493_015951-T1RING FINGER PROTEIN 127
OS493_015952-T1RING FINGER PROTEIN 127
OS493_015953-T1RING FINGER PROTEIN 127
OS493_015954-T1PROPERDIN
OS493_015955-T1
OS493_015957-T1PROPERDIN
OS493_015958-T1SOLUTE CARRIER FAMILY 22 MEMBER
OS493_015959-T1SOLUTE CARRIER FAMILY 22 MEMBER
OS493_015960-T1
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