Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_015910-T1 | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED |
OS493_015911-T1 | TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2 |
OS493_015912-T1 | SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED |
OS493_015913-T1 | FLOTILLIN-RELATED |
OS493_015914-T1 | FLOTILLIN-RELATED |
OS493_015915-T1 | SEC14 RELATED PROTEIN |
OS493_015916-T1 | SNF2/RAD54 FAMILY MEMBER |
OS493_015917-T1 | - |
OS493_015918-T1 | CENTROMERE PROTEIN V |
OS493_015919-T1 | CENTROMERE PROTEIN V |
OS493_015920-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_015921-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_015922-T1 | |
OS493_015923-T1 | |
OS493_015924-T1 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR |
OS493_015925-T1 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR |
OS493_015926-T1 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR |
OS493_015927-T1 | TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN |
OS493_015928-T1 | TGF-BETA FAMILY |
OS493_015929-T1 | NGG1 INTERACTING FACTOR 3 |
OS493_015930-T1 | RUS1 FAMILY PROTEIN C16ORF58 |
OS493_015931-T1 | RUS1 FAMILY PROTEIN C16ORF58 |
OS493_015932-T1 | |
OS493_015933-T1 | CARBOHYDRATE BINDING DOMAIN CONTAINING PROTEIN |
OS493_015934-T1 | OPSIN |
OS493_015935-T1 | G PROTEIN-COUPLED RECEPTOR |
OS493_015936-T1 | OPSIN |
OS493_015937-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
OS493_015938-T1 | MICRORNA PROCESSOR COMPLEX SUBUNIT DGCR8 |
OS493_015939-T1 | TRANSDUCIN BETA-LIKE 3 |
OS493_015940-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_015941-T1 | UNCHARACTERIZED |
OS493_015942-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
OS493_015943-T1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
OS493_015944-T1 | |
OS493_015945-T1 | |
OS493_015946-T1 | |
OS493_015947-T1 | PROTEIN ABHD11 |
OS493_015948-T1 | RAS-RELATED PROTEIN RAB |
OS493_015949-T1 | PROPERDIN |
OS493_015950-T1 | |
OS493_015951-T1 | RING FINGER PROTEIN 127 |
OS493_015952-T1 | RING FINGER PROTEIN 127 |
OS493_015953-T1 | RING FINGER PROTEIN 127 |
OS493_015954-T1 | PROPERDIN |
OS493_015955-T1 | |
OS493_015957-T1 | PROPERDIN |
OS493_015958-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
OS493_015959-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
OS493_015960-T1 |