Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_016065-T1 | METHYLTRANSFERASE-LIKE PROTEIN 24 |
OS493_016066-T1 | |
OS493_016067-T1 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
OS493_016068-T1 | |
OS493_016069-T1 | |
OS493_016070-T1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_016071-T1 | |
OS493_016073-T1 | BTB/POZ DOMAIN-CONTAINING |
OS493_016074-T1 | TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE |
OS493_016075-T1 | RIIA DOMAIN-CONTAINING PROTEIN 1 |
OS493_016076-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_016077-T1 | USP DOMAIN-CONTAINING PROTEIN |
OS493_016078-T1 | |
OS493_016079-T1 | USP DOMAIN-CONTAINING PROTEIN |
OS493_016080-T1 | USP DOMAIN-CONTAINING PROTEIN |
OS493_016081-T1 | |
OS493_016082-T1 | |
OS493_016083-T1 | SMALL NUCLEAR RNA ACTIVATING COMPLEX, POLYPEPTIDE 1 |
OS493_016084-T1 | |
OS493_016085-T1 | NISCHARIN RELATED |
OS493_016086-T1 | LEUCINE-RICH REPEAT-CONTAINING |
OS493_016087-T1 | AQUAPORIN TRANSPORTER |
OS493_016088-T1 | MYOSIN |
OS493_016089-T1 | CYCLIN DEPENDANT KINASE-5 ACTIVATOR |
OS493_016090-T1 | MULTIPLE MYELOMA TUMOR-ASSOCIATED PROTEIN 2 FAMILY MEMBER |
OS493_016091-T1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
OS493_016092-T1 | ADP RIBOSYLATION FACTOR-RELATED |
OS493_016093-T1 | TELOMERE REPEATS-BINDING BOUQUET FORMATION PROTEIN 2 |
OS493_016094-T1 | G PROTEIN-COUPLED RECEPTOR 157-RELATED |
OS493_016095-T1 | G PROTEIN-COUPLED RECEPTOR 157-RELATED |
OS493_016096-T1 | |
OS493_016097-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
OS493_016098-T1 | |
OS493_016100-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_016101-T1 | CD59 GLYCOPROTEIN |
OS493_016102-T1 | MIXED LINEAGE PROTEIN KINASE |
OS493_016103-T1 | DEHYDROGENASES, SHORT CHAIN |
OS493_016104-T1 | TUBULIN |
OS493_016105-T1 | TUBULIN |
OS493_016106-T1 | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS |
OS493_016107-T1 | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS |
OS493_016108-T1 | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS |
OS493_016109-T1 | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED |
OS493_016110-T1 | |
OS493_016111-T1 | OS-9-RELATED |
OS493_016112-T1 | NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [CARBOXYLATING] |
OS493_016113-T1 | CHROMOSOME 16 OPEN READING FRAME 96 |
OS493_016114-T1 | CHROMOSOME 16 OPEN READING FRAME 96 |
OS493_016115-T1 | |
OS493_016116-T1 | GUANYLYL CYCLASE |