About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_016340-T1
OS493_016341-T1LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN
OS493_016342-T1
OS493_016343-T1
OS493_016344-T1SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 3
OS493_016345-T1
OS493_016346-T1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
OS493_016347-T1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
OS493_016348-T1
OS493_016349-T1
OS493_016350-T1
OS493_016351-T1
OS493_016352-T1
OS493_016353-T1
OS493_016354-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_016355-T1
OS493_016356-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_016360-T1
OS493_016361-T1
OS493_016362-T1EXPRESSED PROTEIN
OS493_016363-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_016364-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_016365-T1
OS493_016366-T1
OS493_016367-T1
OS493_016368-T1
OS493_016369-T1
OS493_016370-T1BTB DOMAIN-CONTAINING PROTEIN
OS493_016371-T1TRICHOPLEIN KERATIN FILAMENT-BINDING PROTEIN FAMILY MEMBER
OS493_016372-T1IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7
OS493_016373-T1
OS493_016374-T1TUDOR DOMAIN CONTAINING PROTEIN
OS493_016375-T1SERINE/ARGININE-RICH SPLICING FACTOR
OS493_016376-T1
OS493_016377-T1
OS493_016378-T1
OS493_016379-T1
OS493_016380-T1FLAVIN MONOAMINE OXIDASE
OS493_016381-T1
OS493_016382-T1
OS493_016383-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_016384-T1SCHLAFEN
OS493_016385-T1
OS493_016386-T1SCHLAFEN
OS493_016388-T1SH2-SH3 ADAPTOR PROTEIN-RELATED
OS493_016389-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_016390-T1G-PROTEIN COUPLED RECEPTOR 89-RELATED
OS493_016391-T1CYCLINS
OS493_016392-T1PROTEASOME SUBUNIT ALPHA/BETA
OS493_016393-T1MUTATED IN BLADDER CANCER 1
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