About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_016394-T1MUTATED IN BLADDER CANCER 1
OS493_016396-T1
OS493_016397-T1MYOSIN
OS493_016398-T1
OS493_016399-T1KELCH DOMAIN-CONTAINING PROTEIN
OS493_016400-T1ADENOSINE DEAMINASE
OS493_016401-T1PROTEIN FAM221A-RELATED
OS493_016402-T1TRANSGELIN
OS493_016403-T1
OS493_016404-T1AGAP007712-PA
OS493_016405-T1
OS493_016406-T1AGAP007712-PA
OS493_016407-T1MOLTING PROTEIN MLT-4
OS493_016409-T1METABOTROPIC GLUTAMATE RECEPTOR
OS493_016410-T1METABOTROPIC GLUTAMATE RECEPTOR
OS493_016411-T1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
OS493_016412-T1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
OS493_016413-T1
OS493_016414-T1HOMEOBOX PROTEIN TRANSCRIPTION FACTORS
OS493_016415-T1RAB GDP/GTP EXCHANGE FACTOR
OS493_016416-T1
OS493_016417-T1STAR-RELATED LIPID TRANSFER PROTEIN 9
OS493_016418-T1STAR-RELATED LIPID TRANSFER PROTEIN 9
OS493_016419-T1TESTIS-SPECIFIC Y-ENCODED PROTEIN
OS493_016420-T1GRPE PROTEIN
OS493_016421-T1
OS493_016422-T1INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
OS493_016423-T1
OS493_016424-T1VESICLE PROTEIN SORTING-ASSOCIATED
OS493_016425-T1TETRATRICOPEPTIDE REPEAT PROTEIN
OS493_016426-T1
OS493_016427-T1
OS493_016428-T1
OS493_016429-T1
OS493_016430-T1CD59 GLYCOPROTEIN
OS493_016431-T1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
OS493_016432-T1
OS493_016433-T1
OS493_016434-T1
OS493_016436-T1
OS493_016438-T1G PROTEIN-COUPLED RECEPTOR
OS493_016439-T1INSULIN GENE ENHANCER PROTEIN
OS493_016441-T1
OS493_016442-T1
OS493_016443-T1S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUM
OS493_016444-T1S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUM
OS493_016445-T1TUBULIN-SPECIFIC CHAPERONE A
OS493_016446-T1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
OS493_016447-T1SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP
OS493_016448-T1GLR0591 PROTEIN
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