Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_016394-T1 | MUTATED IN BLADDER CANCER 1 |
OS493_016396-T1 | |
OS493_016397-T1 | MYOSIN |
OS493_016398-T1 | |
OS493_016399-T1 | KELCH DOMAIN-CONTAINING PROTEIN |
OS493_016400-T1 | ADENOSINE DEAMINASE |
OS493_016401-T1 | PROTEIN FAM221A-RELATED |
OS493_016402-T1 | TRANSGELIN |
OS493_016403-T1 | |
OS493_016404-T1 | AGAP007712-PA |
OS493_016405-T1 | |
OS493_016406-T1 | AGAP007712-PA |
OS493_016407-T1 | MOLTING PROTEIN MLT-4 |
OS493_016409-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
OS493_016410-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
OS493_016411-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
OS493_016412-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
OS493_016413-T1 | |
OS493_016414-T1 | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS |
OS493_016415-T1 | RAB GDP/GTP EXCHANGE FACTOR |
OS493_016416-T1 | |
OS493_016417-T1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
OS493_016418-T1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
OS493_016419-T1 | TESTIS-SPECIFIC Y-ENCODED PROTEIN |
OS493_016420-T1 | GRPE PROTEIN |
OS493_016421-T1 | |
OS493_016422-T1 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN |
OS493_016423-T1 | |
OS493_016424-T1 | VESICLE PROTEIN SORTING-ASSOCIATED |
OS493_016425-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN |
OS493_016426-T1 | |
OS493_016427-T1 | |
OS493_016428-T1 | |
OS493_016429-T1 | |
OS493_016430-T1 | CD59 GLYCOPROTEIN |
OS493_016431-T1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
OS493_016432-T1 | |
OS493_016433-T1 | |
OS493_016434-T1 | |
OS493_016436-T1 | |
OS493_016438-T1 | G PROTEIN-COUPLED RECEPTOR |
OS493_016439-T1 | INSULIN GENE ENHANCER PROTEIN |
OS493_016441-T1 | |
OS493_016442-T1 | |
OS493_016443-T1 | S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUM |
OS493_016444-T1 | S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUM |
OS493_016445-T1 | TUBULIN-SPECIFIC CHAPERONE A |
OS493_016446-T1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
OS493_016447-T1 | SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP |
OS493_016448-T1 | GLR0591 PROTEIN |