Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_016553-T1 | SRCR DOMAIN-CONTAINING PROTEIN |
OS493_016554-T1 | CARBON CATABOLITE REPRESSOR PROTEIN 4 |
OS493_016555-T1 | |
OS493_016556-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
OS493_016557-T1 | |
OS493_016558-T1 | |
OS493_016559-T1 | EARLY ENDOSOME ANTIGEN 1 |
OS493_016560-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
OS493_016561-T1 | |
OS493_016563-T1 | |
OS493_016564-T1 | |
OS493_016565-T1 | PRE-MRNA SPLICING FACTOR-RELATED |
OS493_016566-T1 | CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR |
OS493_016567-T1 | RNA-BINDING ASCH DOMAIN PROTEIN |
OS493_016568-T1 | MAINTENANCE OF KILLER 16 MAK16 PROTEIN-RELATED |
OS493_016569-T1 | CXXC-TYPE ZINC FINGER PROTEIN 1 |
OS493_016570-T1 | LYSINE-SPECIFIC DEMETHYLASE |
OS493_016571-T1 | LYSINE-SPECIFIC DEMETHYLASE |
OS493_016572-T1 | UNCHARACTERIZED |
OS493_016573-T1 | |
OS493_016574-T1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
OS493_016575-T1 | PHOSDUCIN-LIKE PROTEIN |
OS493_016576-T1 | |
OS493_016577-T1 | |
OS493_016578-T1 | CYCLIN-D-BINDING MYB-LIKE TRANSCRIPTION FACTOR 1 |
OS493_016579-T1 | |
OS493_016580-T1 | |
OS493_016581-T1 | |
OS493_016582-T1 | EXPRESSED PROTEIN |
OS493_016583-T1 | |
OS493_016584-T1 | CGI-121 FAMILY MEMBER |
OS493_016585-T1 | ALPHA-1,2-GLUCOSYLTRANSFERASE ALG10 |
OS493_016586-T1 | |
OS493_016587-T1 | DIFFERENTIAL DISPLAY AND ACTIVATED BY P53 DDA3 /G2 S PHASE EXPRESSED 1 |
OS493_016588-T1 | G_PROTEIN_RECEP_F2_4 DOMAIN-CONTAINING PROTEIN |
OS493_016589-T1 | G_PROTEIN_RECEP_F2_4 DOMAIN-CONTAINING PROTEIN |
OS493_016590-T1 | |
OS493_016591-T1 | PHD/F-BOX CONTAINING PROTEIN |
OS493_016592-T1 | CADHERIN-23 |
OS493_016593-T1 | CADHERIN-23 |
OS493_016594-T1 | CADHERIN-23 |
OS493_016595-T1 | CADHERIN-23 |
OS493_016596-T1 | |
OS493_016599-T1 | POLYCOMB GROUP PROTEIN |
OS493_016600-T1 | |
OS493_016601-T1 | |
OS493_016602-T1 | TRANSLOCON-ASSOCIATED PROTEIN TRAP , GAMMA SUBUNIT |
OS493_016603-T1 | HFM1, ATP DEPENDENT DNA HELICASE HOMOLOG |
OS493_016604-T1 | HFM1, ATP DEPENDENT DNA HELICASE HOMOLOG |
OS493_016605-T1 |