Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_016714-T1 | BETA-HEXOSAMINIDASE |
OS493_016715-T1 | ZINC-FINGER PROTEIN NOLZ1-RELATED |
OS493_016716-T1 | WINGS APART-LIKE PROTEIN HOMOLOG |
OS493_016717-T1 | DUF4605 DOMAIN-CONTAINING PROTEIN |
OS493_016718-T1 | RAPSYN-RELATED |
OS493_016719-T1 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_016720-T1 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_016721-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_016722-T1 | |
OS493_016723-T1 | LEUCINE-RICH MELANOCYTE DIFFERENTIATION-ASSOCIATED PROTEIN |
OS493_016724-T1 | PROTEIN CBG03580 |
OS493_016725-T1 | |
OS493_016726-T1 | AGAP005574-PA |
OS493_016727-T1 | GATA-TYPE ZINC FINGER PROTEIN 1 |
OS493_016728-T1 | SOX TRANSCRIPTION FACTOR |
OS493_016730-T1 | |
OS493_016731-T1 | N-LYSINE METHYLTRANSFERASE KMT5A |
OS493_016732-T1 | FI18025P1 |
OS493_016733-T1 | GATA-TYPE ZINC FINGER PROTEIN 1 |
OS493_016734-T1 | |
OS493_016735-T1 | |
OS493_016736-T1 | PATCHED-RELATED |
OS493_016737-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_016738-T1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
OS493_016739-T1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
OS493_016741-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_016742-T1 | FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_016743-T1 | |
OS493_016744-T1 | |
OS493_016747-T1 | |
OS493_016748-T1 | |
OS493_016749-T1 | |
OS493_016750-T1 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_016751-T1 | |
OS493_016752-T1 | C-TYPE LECTIN SUPERFAMILY MEMBER |
OS493_016753-T1 | C-TYPE LECTIN SUPERFAMILY MEMBER |
OS493_016754-T1 | ALPHA-MANNOSIDE BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE |
OS493_016755-T1 | |
OS493_016756-T1 | PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED |
OS493_016757-T1 | |
OS493_016758-T1 | |
OS493_016759-T1 | |
OS493_016760-T1 | |
OS493_016761-T1 | |
OS493_016762-T1 | |
OS493_016763-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_016764-T1 | ZGC:162816-RELATED |
OS493_016765-T1 | DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN |
OS493_016766-T1 | DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN |
OS493_016767-T1 |