About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_006583-T1PROTEIN RER1
OS493_006584-T1CHORDIN
OS493_006586-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_006587-T1COLD SHOCK DOMAIN CONTAINING PROTEINS
OS493_006588-T1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION, SUBUNIT 18
OS493_006589-T1PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER
OS493_006590-T1FE2OG DIOXYGENASE DOMAIN-CONTAINING PROTEIN
OS493_006591-T1-
OS493_006592-T1-
OS493_006593-T1-
OS493_006594-T1ADIPOR/PROGESTIN RECEPTOR-RELATED
OS493_006595-T1CHLORIDE CHANNEL PROTEIN 2
OS493_006596-T1EPITHELIAL MEMBRANE PROTEIN-RELATED
OS493_006598-T1-
OS493_006599-T1WD-40 REPEAT PROTEIN
OS493_006600-T1PROTEIN CBG12474
OS493_006601-T1-
OS493_006602-T1ELECTRON TRANSPORT PROTIN SCO1/SENC FAMILY MEMBER
OS493_006603-T1UNCHARACTERIZED
OS493_006604-T1UNCHARACTERIZED
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