About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_016657-T1GRIP-1 ASSOCIATED PROTEIN 1
OS493_016658-T1
OS493_016659-T1
OS493_016660-T1
OS493_016661-T1INTELECTIN
OS493_016662-T1INTELECTIN
OS493_016663-T1TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
OS493_016664-T1TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
OS493_016667-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_016668-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_016669-T1LEUCOKININ RECEPTOR-RELATED
OS493_016670-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_016671-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_016672-T1LEUCOKININ RECEPTOR-RELATED
OS493_016673-T1
OS493_016674-T1LEUCOKININ RECEPTOR-RELATED
OS493_016675-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_016676-T1
OS493_016679-T1TUMOR NECROSIS FACTOR FAMILY MEMBER
OS493_016680-T1LEUCOKININ RECEPTOR-RELATED
OS493_016681-T1LEUCOKININ RECEPTOR-RELATED
OS493_016682-T1
OS493_016683-T1UNCHARACTERIZED
OS493_016684-T1TRANSLOCON-ASSOCIATED PROTEIN, DELTA SUBUNIT
OS493_016685-T1U1-TYPE DOMAIN-CONTAINING PROTEIN
OS493_016686-T1BONE MARROW PROTEOGLYCAN
OS493_016687-T1N-FATTY-ACYL-AMINO ACID SYNTHASE/HYDROLASE PM20D1
OS493_016688-T1SERINE PEPTIDASE S9 FAMILY MEMBER
OS493_016689-T1SERINE PEPTIDASE S9 FAMILY MEMBER
OS493_016690-T1UBIQUITIN-CONJUGATING ENZYME E2
OS493_016692-T1THREONINE SYNTHASE-LIKE 1
OS493_016693-T1THREONINE SYNTHASE-LIKE 1
OS493_016694-T1
OS493_016695-T1TUMOR NECROSIS FACTOR FAMILY MEMBER
OS493_016696-T1METABOTROPIC GLUTAMATE RECEPTOR
OS493_016697-T1PERIAXIN/AHNAK
OS493_016699-T1
OS493_016700-T1TRANSPORT AND GOLGI ORGANIZATION PROTEIN 6 FAMILY MEMBER
OS493_016702-T1UNCHARACTERIZED
OS493_016703-T1ACYL-COA DESATURASE
OS493_016704-T1ACYL-COA DESATURASE
OS493_016705-T1ACYL-COA DESATURASE
OS493_016706-T1BETA-HEXOSAMINIDASE
OS493_016707-T1BETA-HEXOSAMINIDASE
OS493_016708-T1BETA-HEXOSAMINIDASE
OS493_016709-T1BETA-HEXOSAMINIDASE
OS493_016710-T1BETA-HEXOSAMINIDASE
OS493_016711-T1BETA-HEXOSAMINIDASE
OS493_016712-T1BETA-HEXOSAMINIDASE
OS493_016713-T1
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