About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_016931-T1DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL
OS493_016932-T1DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL
OS493_016933-T1PROPERDIN
OS493_016934-T1QUINONE OXIDOREDUCTASE PIG3-RELATED
OS493_016936-T1MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20-RELATED
OS493_016937-T1
OS493_016938-T1
OS493_016939-T1
OS493_016940-T1
OS493_016941-T1
OS493_016942-T1
OS493_016943-T1
OS493_016944-T1
OS493_016945-T1
OS493_016946-T1
OS493_016947-T1
OS493_016948-T1COLLAGEN ALPHA
OS493_016949-T1
OS493_016950-T1
OS493_016951-T1
OS493_016952-T1
OS493_016953-T1
OS493_016954-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_016955-T1
OS493_016956-T1F-BOX/WD REPEAT-CONTAINING PROTEIN 5
OS493_016957-T1F-BOX/WD REPEAT-CONTAINING PROTEIN 5
OS493_016958-T1LARGE PROLINE-RICH PROTEIN BAG6
OS493_016960-T1LEUCOKININ RECEPTOR-RELATED
OS493_016961-T1
OS493_016962-T1
OS493_016963-T1CYCLIN-D-BINDING MYB-LIKE TRANSCRIPTION FACTOR 1
OS493_016964-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_016965-T1
OS493_016966-T1IODOTHYRONINE DEIODINASE
OS493_016967-T1
OS493_016968-T1IODOTHYRONINE DEIODINASE
OS493_016969-T1RAPSYN-RELATED
OS493_016970-T1SARCOSINE DEHYDROGENASE-RELATED
OS493_016971-T1URIDINE KINASE
OS493_016972-T1
OS493_016973-T1
OS493_016974-T1MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
OS493_016975-T1
OS493_016976-T1AP COMPLEX SUBUNIT MU
OS493_016977-T1
OS493_016978-T1
OS493_016979-T1TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER
OS493_016980-T1UNCHARACTERIZED
OS493_016981-T1HAMARTIN
OS493_016982-T1
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