Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_017086-T1 | |
OS493_017087-T1 | |
OS493_017088-T1 | |
OS493_017089-T1 | |
OS493_017090-T1 | - |
OS493_017091-T1 | CDGSH IRON-SULFUR DOMAIN-CONTAINING PROTEIN 1 |
OS493_017092-T1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
OS493_017093-T1 | UBIQUITIN-CONJUGATING ENZYME E2 |
OS493_017094-T1 | UBIQUITIN-CONJUGATING ENZYME E2 |
OS493_017095-T1 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
OS493_017096-T1 | |
OS493_017097-T1 | |
OS493_017098-T1 | OLIGOSACCHARYLTRANSFERASE COMPLEX SUBUNIT OSTC |
OS493_017099-T1 | CELL DIVISION PROTEIN KINASE |
OS493_017100-T1 | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED |
OS493_017101-T1 | |
OS493_017102-T1 | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED |
OS493_017103-T1 | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED |
OS493_017104-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_017105-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_017106-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_017107-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_017112-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_017113-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_017114-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_017115-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_017116-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_017117-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_017118-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_017119-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_017120-T1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_017121-T1 | WNT RELATED |
OS493_017122-T1 | |
OS493_017123-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_017124-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_017125-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_017126-T1 | NEUROHYPOPHYSIAL HORMONES, N-TERMINAL DOMAIN CONTAINING PROTEIN |
OS493_017127-T1 | |
OS493_017128-T1 | |
OS493_017129-T1 | TUBULIN |
OS493_017130-T1 | TUBULIN |
OS493_017131-T1 | ANNEXIN |
OS493_017132-T1 | |
OS493_017133-T1 | CARBON CATABOLITE REPRESSOR PROTEIN 4 |
OS493_017134-T1 | |
OS493_017135-T1 | TRANSMEMBRANE PROTEIN 72 |
OS493_017136-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_017137-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_017138-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_017139-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |