Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_016983-T1 | EXPRESSED PROTEIN |
OS493_016984-T1 | |
OS493_016985-T1 | VON WILLEBRAND FACTOR C AND EGF DOMAIN-CONTAINING PROTEIN |
OS493_016986-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
OS493_016987-T1 | NG37 |
OS493_016988-T1 | TUBULIN POLYGLUTAMYLASE |
OS493_016989-T1 | FI04487P |
OS493_016990-T1 | FI04487P |
OS493_016991-T1 | SODIUM/HYDROGEN EXCHANGER |
OS493_016992-T1 | UNCHARACTERIZED |
OS493_016993-T1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_016994-T1 | |
OS493_016995-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_016996-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_016997-T1 | LEUKOCYTE CELL-DERIVED CHEMOTAXIN 2 |
OS493_016998-T1 | LEUKOCYTE CELL-DERIVED CHEMOTAXIN 2 |
OS493_016999-T1 | ANKYRIN REPEAT PROTEIN |
OS493_017000-T1 | PROMININ PROM PROTEIN |
OS493_017001-T1 | GLYCOPROTEIN HORMONE RECEPTOR |
OS493_017002-T1 | IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS |
OS493_017003-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
OS493_017004-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
OS493_017005-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
OS493_017006-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
OS493_017007-T1 | |
OS493_017008-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
OS493_017009-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
OS493_017010-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
OS493_017011-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
OS493_017012-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
OS493_017013-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
OS493_017014-T1 | E3 UBIQUITIN-PROTEIN LIGASE CCNB1IP1 |
OS493_017015-T1 | ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1 |
OS493_017016-T1 | BIFUNCTIONAL TH2 PROTEIN |
OS493_017017-T1 | INTELECTIN |
OS493_017019-T1 | PENTRAXIN |
OS493_017020-T1 | B-CELL LYMPHOMA/LEUKEMIA 10 |
OS493_017021-T1 | NEGATIVE ELONGATION FACTOR E |
OS493_017022-T1 | NUCLEOTIDE KINASE |
OS493_017023-T1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 77 |
OS493_017024-T1 | DC12-RELATED |
OS493_017025-T1 | RIBOSOMAL PROTEIN S6 KINASE |
OS493_017026-T1 | |
OS493_017027-T1 | |
OS493_017028-T1 | RIBONUCLEASE P SUBUNIT P30 |
OS493_017029-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
OS493_017030-T1 | MACROGLOBULIN / COMPLEMENT |
OS493_017031-T1 | MACROGLOBULIN / COMPLEMENT |
OS493_017032-T1 | MACROGLOBULIN / COMPLEMENT |
OS493_017033-T1 | MACROGLOBULIN / COMPLEMENT |