Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_017034-T1 | MACROGLOBULIN / COMPLEMENT |
OS493_017035-T1 | |
OS493_017036-T1 | |
OS493_017037-T1 | |
OS493_017039-T1 | TRANSMEMBRANE GTPASE FZO1 |
OS493_017040-T1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT |
OS493_017041-T1 | SLD5 PROTEIN |
OS493_017042-T1 | NARDILYSIN |
OS493_017043-T1 | CYTOCHROME P450 26 |
OS493_017044-T1 | ORGANIC ANION TRANSPORTER |
OS493_017045-T1 | |
OS493_017046-T1 | TRANSMEMBRANE PROTEIN 127 |
OS493_017047-T1 | 5'-NUCLEOTIDASE DOMAIN-CONTAINING |
OS493_017048-T1 | 5'-NUCLEOTIDASE DOMAIN-CONTAINING |
OS493_017049-T1 | PANTOTHENATE KINASE |
OS493_017050-T1 | TESTIS DEVELOPMENT PROTEIN PRTD |
OS493_017051-T1 | |
OS493_017052-T1 | |
OS493_017053-T1 | MATRIX METALLOPROTEINASE |
OS493_017054-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
OS493_017055-T1 | OSMOSIS RESPONSIVE FACTOR |
OS493_017056-T1 | ADDUCIN |
OS493_017057-T1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 |
OS493_017058-T1 | OS02G0260700 PROTEIN |
OS493_017059-T1 | OS02G0260700 PROTEIN |
OS493_017060-T1 | TESTIS-EXPRESSED PROTEIN 36 |
OS493_017061-T1 | PROLINE SYNTHETASE CO-TRANSCRIBED BACTERIAL HOMOLOG PROTEIN |
OS493_017062-T1 | DNA2/NAM7 HELICASE FAMILY |
OS493_017063-T1 | |
OS493_017064-T1 | |
OS493_017065-T1 | |
OS493_017066-T1 | |
OS493_017067-T1 | |
OS493_017068-T1 | |
OS493_017069-T1 | DNA2/NAM7 HELICASE FAMILY |
OS493_017070-T1 | |
OS493_017071-T1 | |
OS493_017072-T1 | |
OS493_017073-T1 | PROTEIN DD3-3 |
OS493_017074-T1 | PROTEIN DD3-3 |
OS493_017075-T1 | PROTEIN DD3-3 |
OS493_017076-T1 | PROTEIN DD3-3 |
OS493_017077-T1 | PROTEIN DD3-3 |
OS493_017078-T1 | ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER |
OS493_017080-T1 | PROTEIN DD3-3 |
OS493_017081-T1 | PA-PL1 PHOSPHOLIPASE FAMILY |
OS493_017082-T1 | PA-PL1 PHOSPHOLIPASE FAMILY |
OS493_017083-T1 | E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER |
OS493_017084-T1 | |
OS493_017085-T1 | NITRIC OXIDE-ASSOCIATED PROTEIN 1 |