About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_017192-T1UNCHARACTERIZED
OS493_017193-T1AGAP004327-PA
OS493_017194-T1UNCHARACTERIZED FAM3
OS493_017195-T1FORKHEAD BOX PROTEIN
OS493_017196-T1UNCHARACTERIZED
OS493_017197-T1
OS493_017198-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_017199-T1NOTCH LIGAND FAMILY MEMBER
OS493_017200-T1CONTACTIN 5
OS493_017201-T1OPSIN
OS493_017202-T1CXC2 DOMAIN-CONTAINING PROTEIN
OS493_017203-T1
OS493_017204-T1
OS493_017205-T1
OS493_017206-T1
OS493_017207-T1
OS493_017208-T1EXPRESSED PROTEIN
OS493_017209-T1
OS493_017210-T1RAB FAMILY
OS493_017211-T1SIGNAL PEPTIDE PEPTIDASE
OS493_017212-T1OXIDASE/PEROXIDASE
OS493_017213-T1OXIDASE/PEROXIDASE
OS493_017214-T1
OS493_017215-T1OXIDASE/PEROXIDASE
OS493_017216-T1OXIDASE/PEROXIDASE
OS493_017217-T1NEUROLIGIN
OS493_017218-T1NEUROLIGIN
OS493_017219-T1OXIDASE/PEROXIDASE
OS493_017220-T1OXIDASE/PEROXIDASE
OS493_017221-T1NEUROLIGIN
OS493_017222-T1CARBOXYLESTERASE
OS493_017223-T1NEUROLIGIN
OS493_017224-T1
OS493_017225-T1
OS493_017226-T1
OS493_017227-T1
OS493_017228-T1
OS493_017229-T1
OS493_017230-T1SET DOMAIN-CONTAINING PROTEIN-RELATED
OS493_017231-T1
OS493_017232-T1
OS493_017233-T1
OS493_017234-T1
OS493_017235-T1
OS493_017236-T1
OS493_017237-T1ELECTRON TRANSPORT OXIDOREDUCTASE
OS493_017238-T1ELECTRON TRANSPORT OXIDOREDUCTASE
OS493_017239-T1ELECTRON TRANSPORT OXIDOREDUCTASE
OS493_017240-T1
OS493_017241-T1ASPARAGINE SYNTHETASE
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